SNP Report
Basic Infomation
| Name | rs11125871 dbSNP |
|---|---|
| Location | chr:2,61470126 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10496092 | 0.83[AMR][1000 genomes] |
| rs11893880 | 0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12053388 | 0.80[AMR][1000 genomes] |
| rs12620105 | 0.82[AMR][1000 genomes] |
| rs12998475 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1729662 | 0.80[ASN][1000 genomes] |
| rs2167566 | 0.80[AMR][1000 genomes] |
| rs4671401 | 0.89[AFR][1000 genomes] |
| rs4672423 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs4672429 | 0.82[AFR][1000 genomes] |
| rs4672431 | 0.85[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs6545845 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs6545847 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs6709441 | 0.82[AMR][1000 genomes] |
| rs6734628 | 0.83[AMR][1000 genomes] |
| rs6739427 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs6749226 | 0.83[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs7566035 | 0.82[AMR][1000 genomes] |
| rs777588 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs777589 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs777593 | 0.82[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| USP34 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014