SNP Report
Basic Infomation
| Name | rs12998475 dbSNP |
|---|---|
| Location | chr:2,61437487 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11125871 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11893880 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12620105 | 0.82[AFR][1000 genomes] |
| rs1729662 | 0.83[AMR][1000 genomes] |
| rs2600665 | 0.84[AMR][1000 genomes] |
| rs4672423 | 0.88[AMR][1000 genomes] |
| rs4672425 | 0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs6545845 | 0.88[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs6545847 | 0.88[AMR][1000 genomes] |
| rs6709441 | 0.89[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs6734628 | 0.94[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs6739427 | 0.86[AMR][1000 genomes] |
| rs7566035 | 0.85[AFR][1000 genomes] |
| rs777588 | 0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs777589 | 0.88[AMR][1000 genomes] |
| rs777590 | 0.86[AMR][1000 genomes] |
| rs777591 | 0.83[AMR][1000 genomes] |
| rs777593 | 0.89[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| AHSA2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014