SNP Report
Basic Infomation
| Name | rs6706139 dbSNP |
|---|---|
| Location | chr:2,61745139 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11678419 | 0.85[ASN][1000 genomes] |
| rs12473030 | 0.80[ASN][1000 genomes] |
| rs12612677 | 0.81[ASN][1000 genomes] |
| rs12612982 | 0.81[ASN][1000 genomes] |
| rs12617911 | 0.84[ASN][1000 genomes] |
| rs12713437 | 0.80[ASN][1000 genomes] |
| rs12713438 | 0.80[ASN][1000 genomes] |
| rs13413337 | 0.81[ASN][1000 genomes] |
| rs2305155 | 0.83[ASN][1000 genomes] |
| rs2305156 | 0.83[ASN][1000 genomes] |
| rs56322344 | 0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6545872 | 0.80[ASN][1000 genomes] |
| rs6545873 | 0.84[ASN][1000 genomes] |
| rs6545877 | 0.84[ASN][1000 genomes] |
| rs6718887 | 0.83[ASN][1000 genomes] |
| rs6734830 | 0.85[ASN][1000 genomes] |
| rs7557230 | 0.84[ASN][1000 genomes] |
| rs7561229 | 0.84[ASN][1000 genomes] |
| rs7563678 | 0.86[ASN][1000 genomes] |
| rs7591345 | 0.81[ASN][1000 genomes] |
| rs7606167 | 0.84[ASN][1000 genomes] |
| rs766447 | 0.84[ASN][1000 genomes] |
| rs9807965 | 0.87[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| XPO1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014