SNP Report
Basic Infomation
| Name | rs6545888 dbSNP |
|---|---|
| Location | chr:2,61845215 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11887205 | 0.86[ASW][hapmap] |
| rs12713437 | 0.93[ASW][hapmap] |
| rs1562308 | 0.86[ASW][hapmap] |
| rs2518934 | 0.92[CEU][hapmap] |
| rs2592352 | 0.86[ASW][hapmap] |
| rs3821222 | 0.86[ASW][hapmap] |
| rs6545887 | 0.81[CEU][hapmap] |
| rs7355640 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7574631 | 0.81[CEU][hapmap] |
| rs7600515 | 0.82[JPT][hapmap] |
| rs778752 | 0.86[ASW][hapmap];0.81[YRI][hapmap] |
| rs778753 | 0.81[CEU][hapmap] |
| rs778758 | 0.86[ASW][hapmap] |
| rs778764 | 0.81[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| XPO1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 9)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014