SNP Report
Basic Infomation
| Name | rs2421196 dbSNP |
|---|---|
| Location | chr:2,61654256 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10865324 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11677775 | 0.80[ASN][1000 genomes] |
| rs11677776 | 0.80[ASN][1000 genomes] |
| rs1186696 | 0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs12616433 | 0.85[EUR][1000 genomes] |
| rs12617371 | 0.86[ASN][1000 genomes] |
| rs13028833 | 0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1867838 | 0.82[EUR][1000 genomes] |
| rs2084318 | 0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2442025 | 0.89[ASN][1000 genomes] |
| rs2442037 | 0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2694627 | 0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2922089 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs3213951 | 0.80[ASN][1000 genomes] |
| rs34668697 | 0.89[ASN][1000 genomes] |
| rs4672441 | 0.82[ASN][1000 genomes] |
| rs6545855 | 0.81[ASN][1000 genomes] |
| rs6545868 | 0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6708277 | 0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7584500 | 0.85[EUR][1000 genomes] |
| rs7587389 | 0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs778139 | 0.88[EUR][1000 genomes] |
| rs778150 | 0.86[ASN][1000 genomes] |
| rs778153 | 0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs811871 | 0.89[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| USP34 | Distal transcriptional regulation |
| ENSG00000234624 | Distal transcriptional regulation |
| SNORA70B | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014