SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 29)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10169662	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs10865324	0.89[ASN][1000 genomes]
rs11125883	0.96[CEU][hapmap];0.91[CHB][hapmap]
rs11677775	0.90[JPT][hapmap]
rs11677776	0.88[JPT][hapmap]
rs13028833	0.86[ASN][1000 genomes]
rs2084318	1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs2442025	0.80[ASN][1000 genomes]
rs2922089	0.88[ASN][1000 genomes]
rs3213951	0.84[CEU][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34668697	0.80[ASN][1000 genomes]
rs4671397	0.89[JPT][hapmap]
rs4671403	0.90[JPT][hapmap]
rs4672424	0.84[JPT][hapmap]
rs4672427	0.80[CHB][hapmap];0.95[JPT][hapmap]
rs4672441	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6545846	0.84[JPT][hapmap]
rs6545855	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs6545868	0.84[JPT][hapmap]
rs6708277	0.88[ASN][1000 genomes]
rs6737373	0.95[JPT][hapmap]
rs7583383	0.90[JPT][hapmap]
rs7587389	0.85[ASN][1000 genomes]
rs777587	0.95[JPT][hapmap]
rs777592	0.92[CEU][hapmap];1.00[JPT][hapmap]
rs778138	0.88[EUR][1000 genomes]
rs778139	0.84[JPT][hapmap]
rs778153	0.90[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs811871	0.95[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
USP34	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 3)