SNP Report
Basic Infomation
| Name | rs777592 dbSNP |
|---|---|
| Location | chr:2,61418343 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10169482 | 0.83[ASN][1000 genomes] |
| rs10169662 | 0.83[CHB][hapmap];0.94[JPT][hapmap] |
| rs11677775 | 0.95[CHB][hapmap];0.90[JPT][hapmap] |
| rs11677776 | 0.95[CHB][hapmap];0.88[JPT][hapmap] |
| rs1177304 | 0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1177308 | 0.85[CHB][hapmap] |
| rs14170 | 0.85[ASN][1000 genomes] |
| rs2123111 | 0.84[ASN][1000 genomes] |
| rs2600669 | 0.80[CHB][hapmap] |
| rs4671397 | 0.89[JPT][hapmap] |
| rs4671403 | 0.88[CHB][hapmap];0.90[JPT][hapmap] |
| rs4672424 | 0.84[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs4672427 | 0.90[CHB][hapmap];0.95[JPT][hapmap] |
| rs4672440 | 0.92[CEU][hapmap];1.00[JPT][hapmap] |
| rs6545846 | 0.84[JPT][hapmap] |
| rs6545855 | 0.84[CHB][hapmap];0.90[JPT][hapmap] |
| rs6737373 | 0.95[CHB][hapmap];0.95[JPT][hapmap] |
| rs68020555 | 0.82[ASN][1000 genomes] |
| rs7583383 | 0.95[CHB][hapmap];0.90[JPT][hapmap] |
| rs777587 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs778153 | 0.90[JPT][hapmap] |
| rs811871 | 0.90[JPT][hapmap] |
| rs935860 | 0.95[CHB][hapmap];0.80[JPT][hapmap];0.84[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| USP34 | Proximal transcriptional regulation |
| USP34 | Distal transcriptional regulation |
| AHSA2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014