SNP Report
Basic Infomation
| Name | rs777587 dbSNP |
|---|---|
| Location | chr:2,61427675 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 56)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10169482 | 0.96[ASN][1000 genomes] |
| rs10169662 | 0.96[CEU][hapmap];0.83[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.82[MKK][hapmap];0.93[TSI][hapmap];0.86[YRI][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11498 | 0.81[CHD][hapmap];0.90[GIH][hapmap];0.90[MEX][hapmap] |
| rs11677775 | 0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11677776 | 0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11685226 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1177285 | 0.87[GIH][hapmap];0.81[MEX][hapmap] |
| rs1177302 | 0.81[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1177303 | 0.90[GIH][hapmap];0.90[MEX][hapmap] |
| rs1177305 | 0.83[ASN][1000 genomes] |
| rs1177307 | 0.84[ASN][1000 genomes] |
| rs1177308 | 0.89[CEU][hapmap];0.84[CHB][hapmap];0.84[ASN][1000 genomes] |
| rs1177309 | 0.85[CEU][hapmap];0.90[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.83[ASN][1000 genomes] |
| rs11886950 | 0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs11897994 | 0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11903270 | 0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs14170 | 0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1615070 | 0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1729660 | 0.83[CHD][hapmap];0.90[MEX][hapmap] |
| rs1729674 | 0.89[CEU][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2123111 | 0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2123112 | 0.89[ASW][hapmap];0.85[CEU][hapmap];0.95[GIH][hapmap];0.84[JPT][hapmap];0.98[LWK][hapmap];0.81[MEX][hapmap];0.80[MKK][hapmap];0.84[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs2167564 | 0.93[YRI][hapmap];0.87[AFR][1000 genomes] |
| rs2442025 | 0.81[EUR][1000 genomes] |
| rs2593633 | 0.91[LWK][hapmap];0.80[YRI][hapmap] |
| rs2600668 | 0.96[YRI][hapmap];0.96[AFR][1000 genomes] |
| rs2600669 | 0.84[ASN][1000 genomes] |
| rs2600670 | 0.87[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs3213951 | 0.95[JPT][hapmap] |
| rs34668697 | 0.84[EUR][1000 genomes] |
| rs35015708 | 0.80[AMR][1000 genomes] |
| rs35341794 | 0.83[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs35507645 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs3889717 | 0.89[CEU][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4671397 | 0.84[JPT][hapmap] |
| rs4671403 | 0.96[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes] |
| rs4672424 | 1.00[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4672427 | 0.96[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4672440 | 0.95[JPT][hapmap] |
| rs55908966 | 0.81[ASN][1000 genomes] |
| rs60997156 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6545846 | 0.95[GIH][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.83[AMR][1000 genomes] |
| rs6545850 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6545855 | 0.92[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6737373 | 0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.86[YRI][hapmap];0.81[ASN][1000 genomes] |
| rs68020555 | 0.95[ASN][1000 genomes] |
| rs720201 | 0.80[CHD][hapmap];0.90[GIH][hapmap];0.90[MEX][hapmap] |
| rs72884963 | 0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs7558954 | 0.89[CEU][hapmap];0.83[ASN][1000 genomes] |
| rs7583383 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[ASN][1000 genomes] |
| rs777584 | 0.87[GIH][hapmap];0.86[MEX][hapmap];0.81[MKK][hapmap];0.84[TSI][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs777588 | 0.80[YRI][hapmap] |
| rs777592 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs778153 | 0.92[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap] |
| rs811871 | 0.96[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.80[EUR][1000 genomes] |
| rs935860 | 0.95[CHB][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| AHSA2 | Distal transcriptional regulation |
| USP34 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 14)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014