SNP Report

Basic Infomation

Name	rs55908966 dbSNP
Location	chr:2,61394297
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 45)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11685226	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11688322	0.81[AFR][1000 genomes]
rs1177275	0.84[AFR][1000 genomes]
rs1177278	0.82[AFR][1000 genomes]
rs1177285	0.80[AFR][1000 genomes]
rs1177302	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1177303	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1177304	0.82[ASN][1000 genomes]
rs1177305	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1177306	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs1177307	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1177308	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1177309	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11886950	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11897994	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11903270	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12999245	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs14170	0.82[ASN][1000 genomes]
rs1615070	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1665258	0.92[AFR][1000 genomes]
rs1665259	0.91[AFR][1000 genomes]
rs1665260	0.91[AFR][1000 genomes]
rs1665261	0.91[AFR][1000 genomes]
rs1665262	0.91[AFR][1000 genomes]
rs1665263	0.87[AFR][1000 genomes]
rs1729653	0.90[AFR][1000 genomes]
rs1729654	0.87[AFR][1000 genomes]
rs1729671	0.92[AFR][1000 genomes]
rs1729673	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs1729674	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2123111	0.82[ASN][1000 genomes]
rs2420811	0.82[ASN][1000 genomes]
rs2592493	0.90[AFR][1000 genomes]
rs2600669	0.90[ASN][1000 genomes]
rs35015708	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35341794	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs35507645	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3889717	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4672424	0.82[ASN][1000 genomes]
rs60997156	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs720201	0.86[AFR][1000 genomes]
rs72884963	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7558954	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs777587	0.81[ASN][1000 genomes]
rs935860	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
AHSA2	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)