SNP Report
Basic Infomation
| Name | rs7558954 dbSNP |
|---|---|
| Location | chr:2,61384906 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 74)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10169482 | 0.81[ASN][1000 genomes] |
| rs10169662 | 0.85[CEU][hapmap];0.84[CHB][hapmap] |
| rs11498 | 0.95[JPT][hapmap];0.86[AMR][1000 genomes] |
| rs11677775 | 0.82[CEU][hapmap];0.84[CHB][hapmap];0.80[JPT][hapmap] |
| rs11677776 | 0.82[CEU][hapmap];0.83[CHB][hapmap] |
| rs11685226 | 0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11688322 | 0.83[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs1177272 | 0.85[AMR][1000 genomes] |
| rs1177273 | 0.84[AMR][1000 genomes] |
| rs1177275 | 0.86[AFR][1000 genomes];0.86[AMR][1000 genomes] |
| rs1177276 | 0.82[AFR][1000 genomes];0.84[AMR][1000 genomes] |
| rs1177277 | 0.84[AMR][1000 genomes] |
| rs1177278 | 0.84[AFR][1000 genomes];0.86[AMR][1000 genomes] |
| rs1177282 | 0.81[CEU][hapmap];0.91[JPT][hapmap] |
| rs1177285 | 0.81[CEU][hapmap];0.90[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes] |
| rs1177287 | 0.80[JPT][hapmap] |
| rs1177302 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1177303 | 0.95[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1177304 | 0.89[ASN][1000 genomes] |
| rs1177305 | 0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1177306 | 0.98[AFR][1000 genomes];0.88[AMR][1000 genomes] |
| rs1177307 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1177308 | 1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1177309 | 0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11886950 | 0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11897994 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11903270 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12999245 | 0.95[AFR][1000 genomes];0.86[AMR][1000 genomes] |
| rs14170 | 0.82[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1615070 | 0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1665258 | 0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1665259 | 0.86[CEU][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1665260 | 0.86[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1665261 | 0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1665262 | 0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1665263 | 0.88[CEU][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs1729653 | 0.86[CEU][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs1729654 | 0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs1729655 | 0.87[AMR][1000 genomes] |
| rs1729656 | 0.86[AMR][1000 genomes] |
| rs1729660 | 0.85[CEU][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap];0.86[AMR][1000 genomes] |
| rs1729671 | 0.85[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1729673 | 0.86[CEU][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1729674 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2123111 | 0.81[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2167564 | 0.86[CEU][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes] |
| rs2420811 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2441467 | 0.82[CEU][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AMR][1000 genomes] |
| rs2592491 | 0.84[AMR][1000 genomes] |
| rs2592493 | 0.82[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs2592496 | 0.87[AMR][1000 genomes] |
| rs2600668 | 0.90[JPT][hapmap];0.82[AMR][1000 genomes] |
| rs2600669 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs2698194 | 0.85[AMR][1000 genomes] |
| rs3213944 | 0.83[CEU][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs34279970 | 0.88[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs35015708 | 0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs35341794 | 0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs35507645 | 0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs3889717 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4671403 | 0.85[CEU][hapmap];0.81[CHB][hapmap];0.80[JPT][hapmap] |
| rs4672424 | 0.89[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs4672427 | 0.85[CEU][hapmap] |
| rs55908966 | 0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs60997156 | 0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6545846 | 0.80[JPT][hapmap] |
| rs6545855 | 0.82[CEU][hapmap];0.85[CHB][hapmap];0.80[JPT][hapmap] |
| rs6737373 | 0.84[CHB][hapmap] |
| rs720201 | 0.85[CEU][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs72884963 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7583383 | 0.84[CHB][hapmap] |
| rs777587 | 0.89[CEU][hapmap];0.83[ASN][1000 genomes] |
| rs811871 | 0.85[CEU][hapmap];0.80[JPT][hapmap] |
| rs935860 | 0.83[CEU][hapmap];0.84[CHB][hapmap];0.81[JPT][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KIAA1841 | Proximal transcriptional regulation |
| C2orf74 | Proximal transcriptional regulation |
| AHSA2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014