SNP Report
Basic Infomation
| Name | rs2420811 dbSNP |
|---|---|
| Location | chr:2,61390505 |
| Allele | A/T |
LD-proxy of rSNPs(r2>0.8) (count: 35)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11685226 | 0.81[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs1177302 | 0.83[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1177303 | 0.82[AMR][1000 genomes] |
| rs1177305 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1177306 | 0.83[AMR][1000 genomes] |
| rs1177307 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1177308 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1177309 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11886950 | 0.80[ASN][1000 genomes] |
| rs11897994 | 0.81[ASN][1000 genomes] |
| rs11903270 | 0.81[ASN][1000 genomes] |
| rs12999245 | 0.80[AMR][1000 genomes] |
| rs1615070 | 0.82[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1665258 | 0.83[AMR][1000 genomes] |
| rs1665259 | 0.83[AMR][1000 genomes] |
| rs1665260 | 0.83[AMR][1000 genomes] |
| rs1665261 | 0.83[AMR][1000 genomes] |
| rs1665262 | 0.83[AMR][1000 genomes] |
| rs1665263 | 0.83[AMR][1000 genomes] |
| rs1729653 | 0.80[AMR][1000 genomes] |
| rs1729654 | 0.80[AMR][1000 genomes] |
| rs1729671 | 0.83[AMR][1000 genomes] |
| rs1729673 | 0.83[AMR][1000 genomes] |
| rs1729674 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2592493 | 0.83[AMR][1000 genomes] |
| rs2600669 | 0.81[ASN][1000 genomes] |
| rs3213944 | 0.80[AMR][1000 genomes] |
| rs34279970 | 0.80[AMR][1000 genomes] |
| rs35341794 | 0.81[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs35507645 | 0.81[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs3889717 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs55908966 | 0.82[ASN][1000 genomes] |
| rs60997156 | 0.81[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs72884963 | 0.82[ASN][1000 genomes] |
| rs7558954 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| AHSA2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014