SNP Report
Basic Infomation
| Name | rs2123112 dbSNP |
|---|---|
| Location | chr:2,61442075 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 48)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10169662 | 0.81[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.83[JPT][hapmap];0.86[YRI][hapmap] |
| rs11498 | 0.88[CHD][hapmap];0.94[GIH][hapmap];0.90[MEX][hapmap] |
| rs11677775 | 0.84[JPT][hapmap];0.82[YRI][hapmap] |
| rs11677776 | 0.87[JPT][hapmap] |
| rs1177282 | 0.83[CEU][hapmap] |
| rs1177285 | 0.84[CEU][hapmap];0.85[CHD][hapmap];0.92[GIH][hapmap];0.81[MEX][hapmap] |
| rs1177303 | 0.94[GIH][hapmap];0.90[MEX][hapmap];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1177306 | 0.82[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1177309 | 0.89[GIH][hapmap];0.81[MEX][hapmap] |
| rs12999245 | 0.82[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs14170 | 0.82[AMR][1000 genomes] |
| rs1615070 | 0.92[GIH][hapmap];0.81[MEX][hapmap] |
| rs1665258 | 0.83[ASN][1000 genomes] |
| rs1665259 | 0.88[CEU][hapmap];0.83[ASN][1000 genomes] |
| rs1665260 | 0.88[CEU][hapmap];0.83[ASN][1000 genomes] |
| rs1665261 | 0.83[ASN][1000 genomes] |
| rs1665262 | 0.83[ASN][1000 genomes] |
| rs1665263 | 0.86[CEU][hapmap];0.81[ASN][1000 genomes] |
| rs1729653 | 0.88[CEU][hapmap];0.81[ASN][1000 genomes] |
| rs1729654 | 0.81[ASN][1000 genomes] |
| rs1729660 | 0.88[CEU][hapmap];0.90[CHD][hapmap];0.82[GIH][hapmap];0.90[MEX][hapmap];0.82[TSI][hapmap] |
| rs1729671 | 0.88[CEU][hapmap];0.81[CHB][hapmap];0.83[ASN][1000 genomes] |
| rs1729673 | 0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1729674 | 0.89[GIH][hapmap];0.81[MEX][hapmap] |
| rs2005285 | 0.86[ASN][1000 genomes] |
| rs2123111 | 0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs2167564 | 0.88[CEU][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2592493 | 0.84[CEU][hapmap];0.81[ASN][1000 genomes] |
| rs2593633 | 0.89[ASW][hapmap];0.93[LWK][hapmap] |
| rs2600668 | 0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes] |
| rs2600670 | 0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs3213944 | 0.86[CEU][hapmap] |
| rs3889717 | 0.89[GIH][hapmap];0.80[MEX][hapmap] |
| rs4671397 | 0.82[CHD][hapmap];0.80[ASN][1000 genomes] |
| rs4671403 | 0.81[CEU][hapmap];0.84[JPT][hapmap] |
| rs4672424 | 0.85[CEU][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs4672427 | 0.81[CEU][hapmap];0.83[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];0.86[MEX][hapmap];0.81[TSI][hapmap] |
| rs4672441 | 0.84[JPT][hapmap] |
| rs6545846 | 0.88[CEU][hapmap];0.87[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.90[MEX][hapmap];0.89[TSI][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6545855 | 0.84[JPT][hapmap];0.86[YRI][hapmap] |
| rs6737373 | 0.84[JPT][hapmap];0.87[LWK][hapmap];0.86[YRI][hapmap] |
| rs720201 | 0.88[CEU][hapmap];0.85[CHD][hapmap];0.94[GIH][hapmap];0.90[MEX][hapmap];0.81[ASN][1000 genomes] |
| rs7583383 | 0.83[JPT][hapmap] |
| rs777584 | 0.83[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs777587 | 0.89[ASW][hapmap];0.85[CEU][hapmap];0.95[GIH][hapmap];0.84[JPT][hapmap];0.98[LWK][hapmap];0.81[MEX][hapmap];0.80[MKK][hapmap];0.84[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs778153 | 0.84[JPT][hapmap];0.93[YRI][hapmap] |
| rs811871 | 0.81[CEU][hapmap];0.84[JPT][hapmap];0.93[YRI][hapmap] |
| rs935860 | 0.84[JPT][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| USP34 | Proximal transcriptional regulation |
| USP34 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 10)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014