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rVarBase
SNP Report
Basic Infomation
Name
rs11125883  
dbSNP
Location
chr:2,61710573
Allele
A/C
LD-proxy of rSNPs(r
2
>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11692449
0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2084318
0.91[CHB][hapmap]
rs3213951
0.81[CEU][hapmap]
rs4672440
0.96[CEU][hapmap];0.91[CHB][hapmap]
rs4672441
0.96[CEU][hapmap];0.90[CHB][hapmap]
rs74181273
0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs778138
0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs778153
0.81[CHB][hapmap]
rs811871
0.86[CHB][hapmap]
rSNP related genes
Symbol
Regulation type
XPO1
Distal transcriptional regulation
USP34
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
eQTL related gene
Source
C2orf74
GTEx