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rVarBase
SNP Report
Basic Infomation
Name
rs2421200  
dbSNP
Location
chr:2,61711815
Allele
G/T
LD-proxy of rSNPs(r
2
>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10865324
0.82[EUR][1000 genomes]
rs1186696
0.82[EUR][1000 genomes]
rs12616433
0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13028833
0.83[EUR][1000 genomes]
rs1867838
0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2084318
0.82[EUR][1000 genomes]
rs2922089
0.83[EUR][1000 genomes]
rs6708277
0.83[EUR][1000 genomes]
rs7584500
0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7587389
0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs778139
0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs778153
0.80[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
XPO1
Distal transcriptional regulation
USP34
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)