SNP Report
Basic Infomation
| Name | rs6741734 dbSNP |
|---|---|
| Location | chr:2,61407245 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1017584 | 0.85[CHB][hapmap];0.85[JPT][hapmap] |
| rs10205969 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs1059541 | 0.86[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11647 | 0.85[CEU][hapmap];0.89[CHB][hapmap];0.80[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs17007164 | 0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs17007967 | 0.85[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes] |
| rs1823685 | 0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2166720 | 0.85[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.95[MEX][hapmap];0.85[TSI][hapmap] |
| rs2600669 | 1.00[YRI][hapmap];0.91[AFR][1000 genomes] |
| rs2839831 | 0.84[JPT][hapmap] |
| rs3856521 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3856522 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56052101 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs59157557 | 0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs72811407 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72811408 | 0.87[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72811410 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72811412 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs72811428 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs72811447 | 0.98[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs72811450 | 0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs72811469 | 0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs72813503 | 0.84[AMR][1000 genomes] |
| rs72813509 | 0.82[AMR][1000 genomes] |
| rs746032 | 0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7564507 | 0.94[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs9653547 | 0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| AHSA2 | Proximal transcriptional regulation |
| AHSA2 | Distal transcriptional regulation |
| USP34 | Distal transcriptional regulation |
| AHSA2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014