SNP Report

Basic Infomation

Name	rs1017584 dbSNP
Location	chr:2,61567906
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 24)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1059541	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs11647	0.86[CHB][hapmap]
rs17007164	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17007967	0.89[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17008881	0.88[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs1823685	0.94[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2166720	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2839831	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34606253	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3856521	0.80[EUR][1000 genomes]
rs3856522	0.88[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap];0.80[EUR][1000 genomes]
rs59157557	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6741734	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs72811447	0.81[ASN][1000 genomes]
rs72811450	0.84[EUR][1000 genomes]
rs72811469	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72813503	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72813509	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72813556	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72813558	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72813572	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs746032	0.88[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap]
rs7564507	0.94[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9653547	0.90[CHB][hapmap];0.83[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
USP34	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)