SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 20)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1017584	0.88[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs1059541	0.85[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs17007967	0.88[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap]
rs1823685	0.94[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2166720	0.88[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2839831	0.88[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs34606253	0.86[ASN][1000 genomes]
rs57444330	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72811450	1.00[AFR][1000 genomes]
rs72811469	1.00[AFR][1000 genomes]
rs72813503	1.00[AFR][1000 genomes]
rs72813509	1.00[AFR][1000 genomes]
rs72813523	0.89[AFR][1000 genomes]
rs72813556	0.88[ASN][1000 genomes]
rs72813558	0.86[ASN][1000 genomes]
rs72813572	0.90[ASN][1000 genomes]
rs72813592	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7559099	0.88[CEU][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7564507	0.94[CEU][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs778754	0.84[CEU][hapmap];1.00[YRI][hapmap]

rSNP related genes

Symbol	Regulation type
USP34	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 0)