SNP Report
Basic Infomation
| Name | rs1823685 dbSNP |
|---|---|
| Location | chr:2,61435085 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 33)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1017584 | 0.94[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs10205969 | 0.82[EUR][1000 genomes] |
| rs1059541 | 1.00[ASW][hapmap];0.82[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11647 | 0.95[CHB][hapmap];0.85[JPT][hapmap];0.83[EUR][1000 genomes] |
| rs17007164 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs17007967 | 0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs17008881 | 0.94[CEU][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs2166720 | 1.00[ASW][hapmap];0.94[CEU][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2839831 | 0.94[CEU][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes] |
| rs34606253 | 0.82[EUR][1000 genomes] |
| rs3856521 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs3856522 | 0.94[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs56052101 | 1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs59157557 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6741734 | 0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.91[TSI][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs72811407 | 1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs72811408 | 1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs72811410 | 1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs72811412 | 1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs72811428 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs72811447 | 0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs72811450 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs72811469 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs72813503 | 1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs72813509 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs72813523 | 0.89[AFR][1000 genomes] |
| rs72813556 | 0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs72813558 | 0.82[EUR][1000 genomes] |
| rs72813572 | 0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs746032 | 1.00[ASW][hapmap];0.94[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7559099 | 0.82[CEU][hapmap] |
| rs7564507 | 1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9653547 | 1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| USP34 | Proximal transcriptional regulation |
| USP34 | Distal transcriptional regulation |
| AHSA2 | Distal transcriptional regulation |
| PUS10 | Distal transcriptional regulation |
| PEX13 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014