SNP Report
Basic Infomation
| Name | rs10205969 dbSNP |
|---|---|
| Location | chr:2,61367664 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1059541 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11647 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1823685 | 0.82[EUR][1000 genomes] |
| rs3856521 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs3856522 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs56052101 | 0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs59157557 | 0.80[EUR][1000 genomes] |
| rs6741734 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs72811407 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs72811408 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs72811410 | 0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs72811412 | 0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs72811428 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs72811447 | 0.83[AMR][1000 genomes] |
| rs72811450 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs746032 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs9653547 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KIAA1841 | Proximal transcriptional regulation |
| C2orf74 | Proximal transcriptional regulation |
| ENSG00000212978 | Distal transcriptional regulation |
| C2orf74 | Distal transcriptional regulation |
| KIAA1841 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014