SNP Report
Basic Infomation
| Name | rs1177274 dbSNP |
|---|---|
| Location | chr:2,61368532 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10496092 | 0.88[GIH][hapmap];0.82[MEX][hapmap] |
| rs11498 | 0.94[ASW][hapmap];1.00[LWK][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes] |
| rs1177273 | 0.87[AFR][1000 genomes] |
| rs1177285 | 0.84[ASW][hapmap] |
| rs1615070 | 0.84[ASW][hapmap];0.84[LWK][hapmap] |
| rs1621048 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1665269 | 0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1729655 | 0.88[AFR][1000 genomes] |
| rs1729656 | 0.89[AFR][1000 genomes] |
| rs1729658 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1729660 | 0.89[ASW][hapmap];0.98[LWK][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes] |
| rs1729662 | 1.00[CEU][hapmap];0.85[CHD][hapmap];0.98[GIH][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1729674 | 0.81[LWK][hapmap] |
| rs2049747 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2167566 | 0.86[GIH][hapmap] |
| rs2441467 | 0.96[YRI][hapmap];0.91[AFR][1000 genomes] |
| rs2592491 | 0.89[AFR][1000 genomes] |
| rs2600665 | 0.88[GIH][hapmap];0.87[MEX][hapmap] |
| rs2698197 | 1.00[CEU][hapmap];0.85[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs3213944 | 0.96[YRI][hapmap];0.92[AFR][1000 genomes] |
| rs34279970 | 0.92[AFR][1000 genomes] |
| rs3889717 | 0.81[LWK][hapmap] |
| rs6739427 | 0.86[GIH][hapmap];0.87[MEX][hapmap] |
| rs720201 | 0.88[ASW][hapmap];0.81[LWK][hapmap] |
| rs777585 | 0.88[GIH][hapmap];0.87[MEX][hapmap] |
| rs777588 | 0.88[CEU][hapmap] |
| rs777589 | 0.88[GIH][hapmap];0.91[MEX][hapmap] |
| rs777591 | 0.88[GIH][hapmap];0.91[MEX][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KIAA1841 | Proximal transcriptional regulation |
| C2orf74 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 14)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014