SNP Report

Basic Infomation

Name	rs1177271 dbSNP
Location	chr:2,61366704
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 34)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11498	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11688322	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1177272	0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1177273	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1177275	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1177276	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1177277	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1177278	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1177282	0.82[ASN][1000 genomes]
rs1177303	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1177306	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12999245	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1665258	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1665259	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1665260	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1665261	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1665262	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1665263	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1729653	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1729654	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1729655	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1729656	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1729660	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1729667	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1729671	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1729673	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2441467	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2592491	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2592493	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2592496	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2698194	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3213944	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34279970	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs720201	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000212978	Distal transcriptional regulation
C2orf74	Distal transcriptional regulation
KIAA1841	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)