SNP Report
Basic Infomation
| Name | rs1624236 dbSNP |
|---|---|
| Location | chr:2,61345481 |
| Allele | A/T |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1177261 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1177263 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1177264 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1177265 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1177266 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1177290 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1177293 | 0.89[EUR][1000 genomes] |
| rs1177300 | 0.90[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1624206 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1626783 | 0.87[EUR][1000 genomes] |
| rs1665257 | 0.81[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1665278 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1665279 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2441463 | 0.80[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KIAA1841 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014