SNP Report

Basic Infomation

Name	rs821551 dbSNP
Location	chr:1,155688580
Allele	C/A

LD-proxy of rSNPs(r²>0.8) (count: 48)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10752611	0.84[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap]
rs10908470	0.84[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap]
rs10908471	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs10908479	0.91[JPT][hapmap]
rs10908481	0.90[CHB][hapmap];0.82[CHD][hapmap];0.91[JPT][hapmap]
rs10908482	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11264380	0.84[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap]
rs11264381	0.84[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs11264387	0.84[CHB][hapmap];0.83[CHD][hapmap];0.83[JPT][hapmap]
rs12035524	0.91[JPT][hapmap]
rs12047756	0.91[JPT][hapmap]
rs12143948	0.81[CEU][hapmap];0.84[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap]
rs12744132	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs12746592	0.84[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap]
rs1556488	0.83[CHD][hapmap];0.90[JPT][hapmap]
rs2048431	0.91[JPT][hapmap]
rs2175391	0.91[JPT][hapmap]
rs2666826	0.90[JPT][hapmap]
rs28662267	0.83[ASN][1000 genomes]
rs2948072	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2985707	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs348196	0.91[JPT][hapmap]
rs35615695	0.84[ASW][hapmap];0.81[CEU][hapmap];0.84[CHB][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.92[MKK][hapmap];0.81[TSI][hapmap]
rs3738590	0.91[JPT][hapmap]
rs3820594	0.84[CHB][hapmap]
rs3892792	0.84[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap]
rs4278368	0.81[ASN][1000 genomes]
rs475550	0.91[JPT][hapmap]
rs490498	1.00[ASW][hapmap];1.00[LWK][hapmap];0.83[MEX][hapmap];0.97[MKK][hapmap]
rs490608	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6427286	0.85[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6427287	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs644853	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs6665227	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6696888	1.00[ASW][hapmap];0.81[CEU][hapmap];0.84[CHB][hapmap];0.89[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.97[MKK][hapmap];0.81[TSI][hapmap]
rs670523	1.00[ASW][hapmap];1.00[LWK][hapmap];0.83[MEX][hapmap];0.97[MKK][hapmap]
rs678157	0.91[JPT][hapmap]
rs708611	0.96[CEU][hapmap];0.90[CHB][hapmap];0.84[CHD][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs729022	0.85[CEU][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap]
rs7541060	0.96[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7550402	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs822025	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs822478	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap]
rs822490	0.92[CEU][hapmap];0.84[CHB][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap]
rs822505	0.84[CEU][hapmap]
rs822508	0.85[CEU][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap]
rs860295	0.92[CEU][hapmap];0.90[CHB][hapmap];0.82[CHD][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap]
rs9426933	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
DAP3	Proximal transcriptional regulation
MSTO2P	RNA binding protein mediated regulation
MSTO1	RNA binding protein mediated regulation
DAP3	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 8)

eQTL related gene	Source
SEPT1	SCAN
ADAM15	Pritchard
PRUNE	SCAN
YY1AP1	SCAN
RIT1	SCAN
SPRR3	SCAN
ROBLD3	SCAN
THEM5	SCAN