SNP Report
Basic Infomation
| Name | rs7550402 dbSNP |
|---|---|
| Location | chr:1,155724898 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10908480 | 0.84[ASN][1000 genomes] |
| rs10908481 | 0.97[ASN][1000 genomes] |
| rs10908482 | 0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11264410 | 0.91[ASN][1000 genomes] |
| rs28662267 | 0.91[ASN][1000 genomes] |
| rs2948071 | 0.84[AFR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2948072 | 0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2985707 | 0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs3738590 | 0.81[ASN][1000 genomes] |
| rs4278368 | 0.98[ASN][1000 genomes] |
| rs490608 | 0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6427286 | 0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6427287 | 0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs644853 | 0.87[AFR][1000 genomes] |
| rs6662953 | 0.86[ASN][1000 genomes] |
| rs6665227 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs708611 | 0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7521594 | 0.81[ASN][1000 genomes] |
| rs7541060 | 0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs821551 | 0.90[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs822025 | 0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs860295 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs9426933 | 0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| GON4L | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014