SNP Report

Basic Infomation

Name	rs7541060 dbSNP
Location	chr:1,155728088
Allele	A/T

LD-proxy of rSNPs(r²>0.8) (count: 43)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10908471	0.92[JPT][hapmap]
rs10908479	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10908480	0.84[ASN][1000 genomes]
rs10908481	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10908482	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11264410	0.91[ASN][1000 genomes]
rs12035524	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12047756	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12744132	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1556488	0.81[JPT][hapmap]
rs2048431	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2175391	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2666826	0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.80[AMR][1000 genomes]
rs28662267	0.91[ASN][1000 genomes]
rs2948071	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2948072	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2985707	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs348196	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs3738590	0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3820594	0.95[CHB][hapmap];0.82[JPT][hapmap]
rs3892792	0.92[JPT][hapmap]
rs4278368	0.98[ASN][1000 genomes]
rs475550	1.00[JPT][hapmap]
rs490608	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6427286	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6427287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs644853	0.84[JPT][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes]
rs6662953	0.86[ASN][1000 genomes]
rs6665227	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs670876	0.86[CHB][hapmap]
rs678157	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs708611	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs729022	0.81[CEU][hapmap]
rs7521594	0.81[ASN][1000 genomes]
rs7550402	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs821551	0.96[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs822025	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs822478	0.90[CHB][hapmap]
rs822490	0.96[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs822505	0.81[CEU][hapmap]
rs822508	0.81[CEU][hapmap]
rs860295	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9426933	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
GON4L	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)