SNP Report
Basic Infomation
| Name | rs670876 dbSNP |
|---|---|
| Location | chr:1,155671678 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 33)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10752611 | 0.80[CEU][hapmap] |
| rs10908470 | 0.80[CEU][hapmap] |
| rs10908471 | 0.81[CEU][hapmap] |
| rs10908479 | 0.84[CEU][hapmap];0.91[CHB][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs10908481 | 0.85[CHB][hapmap] |
| rs11264380 | 0.80[CEU][hapmap] |
| rs11264381 | 0.80[CEU][hapmap] |
| rs11264387 | 0.80[CEU][hapmap] |
| rs12035524 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12047756 | 0.91[CHB][hapmap];0.80[ASN][1000 genomes] |
| rs12744132 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12746592 | 0.80[CEU][hapmap] |
| rs12758945 | 0.80[ASN][1000 genomes] |
| rs1556488 | 0.81[CEU][hapmap] |
| rs2048431 | 0.84[CEU][hapmap];0.90[CHB][hapmap];0.80[ASN][1000 genomes] |
| rs2175391 | 0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs2666826 | 0.95[CHB][hapmap] |
| rs34620961 | 0.80[ASN][1000 genomes] |
| rs348186 | 0.85[AMR][1000 genomes] |
| rs348192 | 0.85[AMR][1000 genomes] |
| rs348196 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs3738590 | 0.84[CEU][hapmap];0.90[CHB][hapmap] |
| rs3820594 | 0.80[CHB][hapmap] |
| rs3892792 | 0.80[CEU][hapmap] |
| rs475550 | 0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6427286 | 0.91[CHB][hapmap] |
| rs6672128 | 0.85[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs678157 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs708611 | 0.85[CHB][hapmap] |
| rs7521594 | 0.81[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs7541060 | 0.86[CHB][hapmap] |
| rs822490 | 0.80[CHB][hapmap] |
| rs860295 | 0.85[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MSTO2P | RNA binding protein mediated regulation |
| MSTO1 | RNA binding protein mediated regulation |
| DAP3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014