SNP Report

Basic Infomation

Name	rs678157 dbSNP
Location	chr:1,155658341
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 49)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10752611	0.80[CEU][hapmap];0.91[JPT][hapmap]
rs10908469	0.92[JPT][hapmap]
rs10908470	0.80[CEU][hapmap];0.91[JPT][hapmap]
rs10908471	0.81[CEU][hapmap];0.92[JPT][hapmap]
rs10908479	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10908481	1.00[JPT][hapmap]
rs11264380	0.80[CEU][hapmap];0.91[JPT][hapmap]
rs11264381	0.80[CEU][hapmap];0.91[JPT][hapmap]
rs11264387	0.80[CEU][hapmap]
rs11264393	0.81[EUR][1000 genomes]
rs12035524	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12047756	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12079134	0.92[JPT][hapmap]
rs12143948	0.91[JPT][hapmap]
rs12740629	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12744132	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12746592	0.80[CEU][hapmap];0.91[JPT][hapmap]
rs12758945	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1360554	0.91[JPT][hapmap]
rs1556488	0.81[CEU][hapmap];0.81[JPT][hapmap]
rs2048431	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2175391	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2666826	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs28662267	0.81[ASN][1000 genomes]
rs34124416	0.83[EUR][1000 genomes]
rs34620961	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs348186	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs348192	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs348196	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35615695	0.91[JPT][hapmap]
rs3738590	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3820594	0.82[JPT][hapmap]
rs3851912	0.83[EUR][1000 genomes]
rs3892792	0.80[CEU][hapmap];0.93[JPT][hapmap]
rs475550	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs490608	0.82[ASN][1000 genomes]
rs6427286	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs644853	0.84[JPT][hapmap]
rs6672128	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6688636	0.91[JPT][hapmap]
rs6696888	0.91[JPT][hapmap]
rs670876	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71628674	0.83[EUR][1000 genomes]
rs7521594	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7541060	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs821551	0.91[JPT][hapmap]
rs822490	0.82[JPT][hapmap]
rs860295	0.82[JPT][hapmap]
rs9426933	0.82[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
DAP3	Proximal transcriptional regulation
YY1AP1	Proximal transcriptional regulation
ASH1L	Distal transcriptional regulation
FURIN	Distal transcriptional regulation
PUS10	Distal transcriptional regulation
PEX13	Distal transcriptional regulation
LINC00476	Distal transcriptional regulation
ERCC6L2	Distal transcriptional regulation
ANXA1	Distal transcriptional regulation
YY1AP1	Distal transcriptional regulation
GON4L	Distal transcriptional regulation
GBAP1	Distal transcriptional regulation
ASH1L-AS1	Distal transcriptional regulation
ENSG00000202077	Distal transcriptional regulation
RUSC1	Distal transcriptional regulation
RUSC1-AS1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)