SNP Report

Basic Infomation

Name	rs10908471 dbSNP
Location	chr:1,155542942
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 76)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10752611	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10796943	0.96[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10796944	0.81[AMR][1000 genomes]
rs10796945	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10796946	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10796947	0.95[ASN][1000 genomes]
rs10908465	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10908466	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10908467	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10908469	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs10908470	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10908479	0.96[CEU][hapmap];0.92[JPT][hapmap];0.87[EUR][1000 genomes]
rs10908481	0.84[CEU][hapmap];0.91[JPT][hapmap]
rs11264369	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11264371	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11264372	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11264374	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11264375	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11264380	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11264381	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11264386	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11264387	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11264393	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11582072	0.95[ASN][1000 genomes]
rs12025532	0.83[AMR][1000 genomes]
rs12026638	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12028416	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12030596	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12035524	0.80[CEU][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes]
rs12037824	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12041534	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12047756	0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12067371	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12079134	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12093350	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12143948	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12239100	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12724079	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12740629	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12744132	0.81[CEU][hapmap];0.92[JPT][hapmap]
rs12746592	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12758945	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1325908	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1360554	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1556488	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1886905	0.96[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap]
rs2048431	0.96[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2175391	0.96[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.89[EUR][1000 genomes]
rs2666826	0.91[JPT][hapmap]
rs34124416	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34620961	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs348186	0.85[EUR][1000 genomes]
rs348196	0.80[CEU][hapmap];0.91[JPT][hapmap]
rs35615695	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3738590	0.96[CEU][hapmap];0.80[CHB][hapmap];0.91[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3851912	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3892792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs475550	0.96[CEU][hapmap];0.91[JPT][hapmap];0.87[EUR][1000 genomes]
rs5005770	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5020058	0.87[EUR][1000 genomes]
rs56675301	0.82[AMR][1000 genomes]
rs6427278	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6427286	0.92[JPT][hapmap]
rs644853	0.92[JPT][hapmap]
rs6672128	0.87[EUR][1000 genomes]
rs6684889	0.89[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs6688636	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6696888	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs670876	0.81[CEU][hapmap]
rs678157	0.81[CEU][hapmap];0.92[JPT][hapmap]
rs71628674	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7411786	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7521594	0.87[EUR][1000 genomes]
rs7541060	0.92[JPT][hapmap]
rs7556102	0.85[CHB][hapmap];0.92[JPT][hapmap]
rs821551	0.84[CHB][hapmap];1.00[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
RUSC1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)