SNP Report

Basic Infomation

Name	rs10908469 dbSNP
Location	chr:1,155468732
Allele	A/C

LD-proxy of rSNPs(r²>0.8) (count: 65)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10752611	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs10796943	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10796945	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10796946	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10908463	0.87[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs10908465	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10908466	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10908467	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10908470	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs10908471	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs10908479	0.92[CEU][hapmap];0.92[JPT][hapmap]
rs11264359	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs11264361	0.84[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs11264363	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11264367	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11264369	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11264370	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11264371	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11264372	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs11264374	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11264375	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11264380	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11264381	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs11264387	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap]
rs12025532	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12026638	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12028416	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12030596	0.83[EUR][1000 genomes]
rs12035524	0.91[JPT][hapmap]
rs12037824	0.81[AMR][1000 genomes]
rs12041534	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12047756	0.92[JPT][hapmap]
rs12067371	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12079134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12081067	0.81[EUR][1000 genomes]
rs12143948	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12239100	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12239114	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12724079	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12744132	0.92[JPT][hapmap]
rs12746592	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1325908	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1360554	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1556488	0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap];0.82[EUR][1000 genomes]
rs1886905	0.92[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap]
rs2025669	0.83[EUR][1000 genomes]
rs2048431	0.92[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap]
rs2175391	0.92[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap]
rs2297480	0.84[CEU][hapmap];0.89[CHB][hapmap]
rs2666826	0.91[JPT][hapmap]
rs348196	0.91[JPT][hapmap]
rs35615695	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3738590	0.92[CEU][hapmap];0.80[CHB][hapmap];0.91[JPT][hapmap]
rs3892792	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs475550	0.92[CEU][hapmap];0.91[JPT][hapmap]
rs5005770	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5020058	0.84[EUR][1000 genomes]
rs56675301	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6684889	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs6688636	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6696888	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs678157	0.92[JPT][hapmap]
rs7411786	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7416976	0.81[EUR][1000 genomes]
rs7556102	0.85[CHB][hapmap];0.92[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
ASH1L	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)