SNP Report
Basic Infomation
| Name | rs2297480 dbSNP |
|---|---|
| Location | chr:1,155279482 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 31)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10796941 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10796943 | 0.82[CEU][hapmap];0.88[CHB][hapmap];0.82[GIH][hapmap];0.94[TSI][hapmap] |
| rs10796945 | 0.80[CEU][hapmap];0.89[CHB][hapmap];0.85[GIH][hapmap];0.88[TSI][hapmap] |
| rs10908461 | 0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10908462 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs10908463 | 1.00[CEU][hapmap];0.89[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs10908465 | 0.88[CEU][hapmap];0.89[CHB][hapmap];0.82[GIH][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap] |
| rs10908469 | 0.84[CEU][hapmap];0.89[CHB][hapmap] |
| rs11264358 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11264359 | 0.96[CEU][hapmap];0.95[CHB][hapmap];0.81[CHD][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11264360 | 0.86[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs11264361 | 1.00[CEU][hapmap];0.89[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs11264363 | 0.84[CHB][hapmap] |
| rs11264367 | 0.88[CEU][hapmap];0.89[CHB][hapmap] |
| rs11264369 | 0.84[CEU][hapmap];0.89[CHB][hapmap] |
| rs11264371 | 0.89[CHB][hapmap];0.85[MEX][hapmap] |
| rs11264372 | 0.89[CHB][hapmap];0.81[MEX][hapmap] |
| rs11264375 | 0.88[CEU][hapmap];0.89[CHB][hapmap];0.82[GIH][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap] |
| rs12026638 | 0.88[CEU][hapmap];0.95[CHB][hapmap];0.82[GIH][hapmap];0.85[MEX][hapmap];0.88[TSI][hapmap] |
| rs12041534 | 0.88[CEU][hapmap];0.89[CHB][hapmap];0.82[GIH][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap] |
| rs12079134 | 0.84[CEU][hapmap];0.89[CHB][hapmap] |
| rs12239114 | 0.88[CEU][hapmap];0.89[CHB][hapmap];0.91[GIH][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap] |
| rs12724079 | 0.89[CHB][hapmap] |
| rs1325908 | 0.89[CHB][hapmap] |
| rs1360554 | 0.89[CHB][hapmap] |
| rs1886905 | 0.84[CEU][hapmap];0.82[MEX][hapmap] |
| rs5005770 | 0.88[CEU][hapmap];0.89[CHB][hapmap];0.82[GIH][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap] |
| rs6672284 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6688636 | 0.89[CHB][hapmap] |
| rs7534795 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9426886 | 0.83[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MFSD8 | Distal transcriptional regulation |
| C4orf29 | Distal transcriptional regulation |
| MTX1 | Distal transcriptional regulation |
| GBAP1 | Distal transcriptional regulation |
| FAM189B | Distal transcriptional regulation |
| CLK2 | Distal transcriptional regulation |
| HCN3 | Distal transcriptional regulation |
| PKLR | Distal transcriptional regulation |
| SCAMP3 | Distal transcriptional regulation |
| MUC1 | Distal transcriptional regulation |
| THBS3 | Distal transcriptional regulation |
| GBA | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 10)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014