SNP Report

Basic Infomation

Name	rs11264361 dbSNP
Location	chr:1,155289545
Allele	T/G

LD-proxy of rSNPs(r²>0.8) (count: 33)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10796941	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10796943	0.82[CEU][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];0.94[TSI][hapmap]
rs10796945	0.80[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];0.85[GIH][hapmap];0.91[JPT][hapmap];0.88[TSI][hapmap]
rs10908461	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10908462	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10908463	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10908465	0.88[CEU][hapmap];1.00[CHB][hapmap];0.80[CHD][hapmap];0.82[GIH][hapmap];0.91[JPT][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap]
rs10908469	0.84[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs11264358	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11264359	0.96[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11264360	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11264363	0.95[CHB][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap]
rs11264367	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs11264369	0.84[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs11264371	1.00[CHB][hapmap];0.80[CHD][hapmap];0.91[JPT][hapmap];0.85[MEX][hapmap]
rs11264372	1.00[CHB][hapmap];0.80[CHD][hapmap];0.91[JPT][hapmap];0.81[MEX][hapmap]
rs11264375	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap]
rs12026638	0.95[CHB][hapmap];0.82[GIH][hapmap];0.91[JPT][hapmap];0.85[MEX][hapmap];0.88[TSI][hapmap]
rs12041534	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap]
rs12079134	0.84[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs12239114	0.88[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap]
rs12724079	1.00[CHB][hapmap];0.85[CHD][hapmap];0.91[JPT][hapmap]
rs1325908	1.00[CHB][hapmap];0.80[CHD][hapmap];0.91[JPT][hapmap]
rs1360554	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs1886905	0.84[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.82[JPT][hapmap];0.82[MEX][hapmap]
rs2297480	1.00[CEU][hapmap];0.89[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs5005770	0.88[CEU][hapmap];1.00[CHB][hapmap];0.80[CHD][hapmap];0.82[GIH][hapmap];0.91[JPT][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap]
rs6672284	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6677385	0.81[EUR][1000 genomes]
rs6684889	0.89[CHB][hapmap]
rs6688636	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs7534795	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7556102	0.84[CHB][hapmap];0.91[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
RUSC1	Proximal transcriptional regulation
GBA	Distal transcriptional regulation
SCAMP3	Distal transcriptional regulation
FAM189B	Distal transcriptional regulation
THBS3	Distal transcriptional regulation
CLK2	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 9)

eQTL related gene	Source
FDPS	seeQTL
SPRR2A	SCAN
YY1AP1	SCAN
RIT1	SCAN
DCST1	SCAN
THEM5	SCAN
LCE1C	SCAN
SPRR2D	SCAN
GBAP1	SCAN