SNP Report
Basic Infomation
| Name | rs1886905 dbSNP |
|---|---|
| Location | chr:1,155372672 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 37)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10752611 | 0.96[CEU][hapmap];0.84[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.89[TSI][hapmap] |
| rs10796943 | 0.91[CEU][hapmap];0.82[CHB][hapmap];0.85[TSI][hapmap] |
| rs10796945 | 0.88[CEU][hapmap];0.84[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.89[TSI][hapmap] |
| rs10908463 | 0.87[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.82[MEX][hapmap] |
| rs10908465 | 0.96[CEU][hapmap];0.84[CHB][hapmap];0.97[CHD][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap] |
| rs10908469 | 0.92[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap] |
| rs10908470 | 0.96[CEU][hapmap];0.84[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap] |
| rs10908471 | 0.96[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap] |
| rs11264359 | 0.80[CEU][hapmap];0.82[JPT][hapmap];0.86[MEX][hapmap];0.84[TSI][hapmap] |
| rs11264361 | 0.84[CEU][hapmap];0.84[CHB][hapmap];0.82[CHD][hapmap];0.82[JPT][hapmap];0.82[MEX][hapmap] |
| rs11264363 | 0.83[ASW][hapmap];0.81[CEU][hapmap];0.97[CHD][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap] |
| rs11264367 | 0.96[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap] |
| rs11264369 | 1.00[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap];0.84[YRI][hapmap];0.80[AFR][1000 genomes] |
| rs11264371 | 0.81[CEU][hapmap];0.84[CHB][hapmap];0.97[CHD][hapmap];0.91[JPT][hapmap] |
| rs11264372 | 0.81[CEU][hapmap];0.84[CHB][hapmap];0.97[CHD][hapmap];0.91[JPT][hapmap] |
| rs11264375 | 0.96[CEU][hapmap];0.84[CHB][hapmap];0.97[CHD][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap] |
| rs11264380 | 0.96[CEU][hapmap];0.84[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap] |
| rs11264381 | 0.96[CEU][hapmap];0.83[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap] |
| rs11264387 | 0.96[CEU][hapmap];0.84[CHB][hapmap];0.89[TSI][hapmap] |
| rs12026638 | 0.88[CEU][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.89[TSI][hapmap] |
| rs12041534 | 0.96[CEU][hapmap];0.84[CHB][hapmap];0.94[CHD][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap] |
| rs12079134 | 0.92[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap] |
| rs12143948 | 1.00[ASW][hapmap];0.81[CEU][hapmap];0.84[CHB][hapmap];0.91[CHD][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.88[LWK][hapmap];0.91[MEX][hapmap];0.91[MKK][hapmap];0.89[TSI][hapmap];0.84[YRI][hapmap] |
| rs12239114 | 0.96[CEU][hapmap];0.84[CHB][hapmap];0.94[CHD][hapmap];0.91[JPT][hapmap];0.86[MEX][hapmap];0.84[TSI][hapmap] |
| rs12724079 | 0.81[CEU][hapmap];0.84[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.83[MKK][hapmap];0.89[TSI][hapmap] |
| rs12746592 | 0.96[CEU][hapmap];0.84[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap] |
| rs1325908 | 1.00[ASW][hapmap];0.84[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];0.91[JPT][hapmap];0.94[LWK][hapmap];0.82[MEX][hapmap];0.88[MKK][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs1360554 | 1.00[ASW][hapmap];0.84[CHB][hapmap];0.91[CHD][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.88[LWK][hapmap];0.91[MEX][hapmap];0.86[MKK][hapmap];0.92[TSI][hapmap];0.84[YRI][hapmap] |
| rs1556488 | 0.96[CEU][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap] |
| rs2297480 | 0.84[CEU][hapmap];0.82[MEX][hapmap] |
| rs35615695 | 0.81[CEU][hapmap];0.84[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.92[TSI][hapmap] |
| rs3892792 | 0.96[CEU][hapmap];0.84[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap] |
| rs5005770 | 0.96[CEU][hapmap];0.84[CHB][hapmap];0.97[CHD][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap] |
| rs6684889 | 0.81[CEU][hapmap] |
| rs6688636 | 0.92[ASW][hapmap];0.81[CEU][hapmap];0.84[CHB][hapmap];0.91[CHD][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.92[TSI][hapmap] |
| rs6696888 | 0.81[CEU][hapmap];0.84[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.92[TSI][hapmap] |
| rs7556102 | 0.89[CHB][hapmap];0.91[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ASH1L | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 8)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014