SNP Report
Basic Infomation
| Name | rs12143948 dbSNP |
|---|---|
| Location | chr:1,155509242 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 46)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10752611 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs10796943 | 1.00[CHB][hapmap] |
| rs10796945 | 1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap] |
| rs10908465 | 1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap] |
| rs10908469 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10908470 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs10908471 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10908479 | 0.81[CHB][hapmap];0.91[JPT][hapmap] |
| rs11264363 | 0.83[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap] |
| rs11264367 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11264369 | 0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs11264371 | 1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap] |
| rs11264372 | 1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap] |
| rs11264375 | 1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap] |
| rs11264380 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap] |
| rs11264381 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs11264387 | 1.00[CHB][hapmap];0.86[CHD][hapmap];0.83[JPT][hapmap] |
| rs12026638 | 0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap] |
| rs12035524 | 0.91[JPT][hapmap] |
| rs12041534 | 1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap] |
| rs12047756 | 0.81[CHB][hapmap];0.91[JPT][hapmap] |
| rs12079134 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12239114 | 1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap] |
| rs12724079 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.95[TSI][hapmap] |
| rs12744132 | 0.91[JPT][hapmap] |
| rs12746592 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
| rs1325908 | 1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.91[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap] |
| rs1360554 | 1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap] |
| rs1556488 | 0.95[CHB][hapmap];0.97[CHD][hapmap];0.90[JPT][hapmap] |
| rs1886905 | 1.00[ASW][hapmap];0.81[CEU][hapmap];0.84[CHB][hapmap];0.91[CHD][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.88[LWK][hapmap];0.91[MEX][hapmap];0.91[MKK][hapmap];0.89[TSI][hapmap];0.84[YRI][hapmap] |
| rs2048431 | 0.81[CHB][hapmap];0.91[JPT][hapmap] |
| rs2175391 | 0.81[CHB][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap] |
| rs2666826 | 0.81[CEU][hapmap];0.90[JPT][hapmap] |
| rs348196 | 0.91[JPT][hapmap] |
| rs35615695 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap] |
| rs3738590 | 0.80[CHB][hapmap];0.91[JPT][hapmap] |
| rs3892792 | 1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap] |
| rs475550 | 0.91[JPT][hapmap];0.83[MEX][hapmap] |
| rs5005770 | 1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap] |
| rs644853 | 1.00[JPT][hapmap] |
| rs6684889 | 1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap] |
| rs6688636 | 0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap] |
| rs6696888 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap] |
| rs678157 | 0.91[JPT][hapmap] |
| rs7556102 | 0.96[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap] |
| rs821551 | 0.81[CEU][hapmap];0.84[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ASH1L-AS1 | Distal transcriptional regulation |
| ASH1L | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 10)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014