SNP Report

Basic Infomation

Name	rs7556102 dbSNP
Location	chr:1,155368203
Allele	C/A

LD-proxy of rSNPs(r²>0.8) (count: 54)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10752611	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs10796943	0.83[CHB][hapmap];0.82[ASN][1000 genomes]
rs10796945	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs10796947	0.85[AMR][1000 genomes]
rs10908463	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs10908465	0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10908469	0.85[CHB][hapmap];0.92[JPT][hapmap]
rs10908470	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs10908471	0.85[CHB][hapmap];0.92[JPT][hapmap]
rs11264359	0.91[JPT][hapmap]
rs11264361	0.84[CHB][hapmap];0.91[JPT][hapmap]
rs11264362	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11264363	0.96[CEU][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11264366	0.85[ASN][1000 genomes]
rs11264367	0.85[CHB][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs11264369	0.85[CHB][hapmap];0.92[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11264370	0.97[ASN][1000 genomes]
rs11264371	0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11264372	0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11264375	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs11264380	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs11264381	0.83[CHB][hapmap];1.00[JPT][hapmap]
rs11264387	0.84[CHB][hapmap];0.83[JPT][hapmap]
rs11582072	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12021631	0.82[ASN][1000 genomes]
rs12024696	0.83[ASN][1000 genomes]
rs12025532	0.95[ASN][1000 genomes]
rs12026638	0.80[CHB][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs12028416	0.82[ASN][1000 genomes]
rs12037824	0.80[ASN][1000 genomes]
rs12041534	0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs12049455	0.82[ASN][1000 genomes]
rs12079134	0.85[CHB][hapmap];0.92[JPT][hapmap]
rs12081067	0.94[ASN][1000 genomes]
rs12131079	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12143948	0.96[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs12239114	0.84[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12724079	0.96[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12746592	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1325908	0.82[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1360554	0.92[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1556488	0.90[JPT][hapmap]
rs1886905	0.89[CHB][hapmap];0.91[JPT][hapmap]
rs2025669	0.94[ASN][1000 genomes]
rs35615695	0.96[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes]
rs3892792	0.84[CHB][hapmap];0.92[JPT][hapmap]
rs5005770	0.84[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs56675301	0.99[ASN][1000 genomes]
rs6684889	0.96[CEU][hapmap];0.81[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6688636	0.96[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs66923802	0.87[ASN][1000 genomes]
rs6696888	0.96[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs71517782	0.89[ASN][1000 genomes]
rs7416976	0.94[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ASH1L-IT1	Proximal transcriptional regulation
ASH1L	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)