SNP Report
Basic Infomation
| Name | rs12049455 dbSNP |
|---|---|
| Location | chr:1,155320492 |
| Allele | T/A |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11264362 | 0.94[ASN][1000 genomes] |
| rs11264363 | 0.95[ASN][1000 genomes] |
| rs11264366 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11264367 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11264369 | 0.87[ASN][1000 genomes] |
| rs11264370 | 0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12021631 | 0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12024696 | 0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12025532 | 0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12081067 | 0.81[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12131079 | 0.97[ASN][1000 genomes] |
| rs12239114 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2025669 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs5005770 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs56675301 | 0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6677385 | 0.87[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs6692183 | 0.85[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs66923802 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs71517782 | 0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7416976 | 0.81[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7556102 | 0.82[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ASH1L | Proximal transcriptional regulation |
| MIR555 | Proximal transcriptional regulation |
| ASH1L | Distal transcriptional regulation |
| MIR555 | Distal transcriptional regulation |
| ASH1L | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014