SNP Report
Basic Infomation
| Name | rs6677385 dbSNP |
|---|---|
| Location | chr:1,155304581 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10908463 | 0.81[EUR][1000 genomes] |
| rs10908467 | 0.84[AFR][1000 genomes] |
| rs11264361 | 0.81[EUR][1000 genomes] |
| rs11264362 | 0.84[ASN][1000 genomes] |
| rs11264363 | 0.83[ASN][1000 genomes] |
| rs11264366 | 0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs11264367 | 0.84[EUR][1000 genomes] |
| rs11264371 | 0.84[AFR][1000 genomes] |
| rs11264375 | 0.83[AFR][1000 genomes] |
| rs12021631 | 0.80[ASN][1000 genomes] |
| rs12024696 | 0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs12041534 | 0.86[AFR][1000 genomes] |
| rs12049455 | 0.87[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs12131079 | 0.81[ASN][1000 genomes] |
| rs12239114 | 0.90[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs5005770 | 0.83[EUR][1000 genomes] |
| rs6692183 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs66923802 | 0.84[EUR][1000 genomes] |
| rs71517782 | 0.80[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FAM189B | Distal transcriptional regulation |
| RUSC1 | Distal transcriptional regulation |
| RUSC1-AS1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014