SNP Report

Basic Infomation

Name	rs6684889 dbSNP
Location	chr:1,155427062
Allele	T/A

LD-proxy of rSNPs(r²>0.8) (count: 52)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10752611	0.89[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs10796943	0.88[CHB][hapmap];0.97[ASN][1000 genomes]
rs10796945	0.89[CHB][hapmap];0.89[JPT][hapmap];0.99[ASN][1000 genomes]
rs10796946	0.99[ASN][1000 genomes]
rs10796947	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10908463	0.89[CHB][hapmap];0.86[JPT][hapmap]
rs10908465	0.89[CHB][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs10908466	0.99[ASN][1000 genomes]
rs10908467	0.97[ASN][1000 genomes]
rs10908469	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs10908470	0.89[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs10908471	0.89[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs11264359	0.83[CHB][hapmap]
rs11264361	0.89[CHB][hapmap]
rs11264363	1.00[CEU][hapmap];0.83[CHB][hapmap];0.89[JPT][hapmap]
rs11264367	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs11264369	0.89[CHB][hapmap];0.90[JPT][hapmap];0.91[YRI][hapmap];0.82[AMR][1000 genomes]
rs11264370	0.82[ASN][1000 genomes]
rs11264371	0.89[CHB][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs11264372	0.89[CHB][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs11264374	0.99[ASN][1000 genomes]
rs11264375	0.89[CHB][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs11264380	0.89[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs11264381	0.89[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs11264386	0.82[ASN][1000 genomes]
rs11264387	0.89[CHB][hapmap]
rs11582072	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12025532	0.84[ASN][1000 genomes]
rs12026638	0.85[CHB][hapmap];0.90[JPT][hapmap];0.97[ASN][1000 genomes]
rs12028416	0.97[ASN][1000 genomes]
rs12030596	0.89[ASN][1000 genomes]
rs12037824	0.95[ASN][1000 genomes]
rs12041534	0.89[CHB][hapmap];0.89[JPT][hapmap];0.97[ASN][1000 genomes]
rs12047756	0.82[JPT][hapmap]
rs12067371	0.98[ASN][1000 genomes]
rs12079134	0.89[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs12143948	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap]
rs12239100	0.99[ASN][1000 genomes]
rs12239114	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs12724079	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.81[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12746592	0.89[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs1325908	0.84[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1360554	0.96[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1556488	0.84[CHB][hapmap];0.89[ASN][1000 genomes]
rs1886905	0.81[CEU][hapmap]
rs35615695	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3892792	0.89[CHB][hapmap];0.91[JPT][hapmap]
rs5005770	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs6688636	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6696888	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs7411786	0.88[ASN][1000 genomes]
rs7556102	0.96[CEU][hapmap];0.81[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ASH1L	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)