SNP Report
Basic Infomation
| Name | rs10796946 dbSNP |
|---|---|
| Location | chr:1,155429490 |
| Allele | A/T |
LD-proxy of rSNPs(r2>0.8) (count: 54)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10752611 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10796943 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10796944 | 0.89[AMR][1000 genomes] |
| rs10796945 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10796947 | 0.93[ASN][1000 genomes] |
| rs10908465 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10908466 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10908467 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs10908469 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs10908470 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs10908471 | 0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11264366 | 0.87[EUR][1000 genomes] |
| rs11264367 | 0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs11264369 | 0.84[EUR][1000 genomes] |
| rs11264370 | 0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11264371 | 0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11264372 | 0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11264374 | 0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11264375 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11264380 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11264381 | 0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11264386 | 0.83[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs11264387 | 0.82[AMR][1000 genomes] |
| rs11582072 | 0.93[ASN][1000 genomes] |
| rs12025532 | 0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12026638 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12028416 | 0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12030596 | 0.84[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12037824 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12041534 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12067371 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12079134 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12081067 | 0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs12239100 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12239114 | 0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs12724079 | 0.99[ASN][1000 genomes] |
| rs12746592 | 0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1325908 | 0.96[ASN][1000 genomes] |
| rs1360554 | 0.92[ASN][1000 genomes] |
| rs1556488 | 0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2025669 | 0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs35615695 | 0.87[ASN][1000 genomes] |
| rs5005770 | 0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs5020058 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs56675301 | 0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs6670014 | 0.80[AMR][1000 genomes] |
| rs6684889 | 0.99[ASN][1000 genomes] |
| rs6688636 | 0.93[ASN][1000 genomes] |
| rs66923802 | 0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs6696888 | 0.89[ASN][1000 genomes] |
| rs71517782 | 0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs71628674 | 0.81[AMR][1000 genomes] |
| rs7411786 | 0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7416976 | 0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ASH1L | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014