SNP Report
Name | rs1325908   dbSNP |
---|---|
Location | chr:1,155413304 |
Allele | C/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10752611 | 1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs10796943 | 1.00[CHB][hapmap];0.98[ASN][1000 genomes] |
rs10796945 | 1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
rs10796946 | 0.96[ASN][1000 genomes] |
rs10796947 | 0.84[AMR][1000 genomes];0.91[ASN][1000 genomes] |
rs10908463 | 1.00[CHB][hapmap];0.89[JPT][hapmap] |
rs10908465 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
rs10908466 | 0.96[ASN][1000 genomes] |
rs10908467 | 0.94[ASN][1000 genomes] |
rs10908469 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs10908470 | 1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
rs10908471 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs11264359 | 0.95[CHB][hapmap];0.91[JPT][hapmap] |
rs11264361 | 1.00[CHB][hapmap];0.80[CHD][hapmap];0.91[JPT][hapmap] |
rs11264362 | 0.81[AMR][1000 genomes] |
rs11264363 | 0.83[ASW][hapmap];0.85[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.81[AMR][1000 genomes] |
rs11264367 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs11264369 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes] |
rs11264370 | 0.82[ASN][1000 genomes] |
rs11264371 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
rs11264372 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
rs11264374 | 0.96[ASN][1000 genomes] |
rs11264375 | 1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
rs11264380 | 1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs11264381 | 1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
rs11264387 | 1.00[CHB][hapmap];0.81[CHD][hapmap];0.83[JPT][hapmap] |
rs11582072 | 0.88[AMR][1000 genomes];0.91[ASN][1000 genomes] |
rs12025532 | 0.84[ASN][1000 genomes] |
rs12026638 | 0.95[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
rs12028416 | 0.98[ASN][1000 genomes] |
rs12030596 | 0.86[ASN][1000 genomes] |
rs12037824 | 0.96[ASN][1000 genomes] |
rs12041534 | 1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
rs12067371 | 0.95[ASN][1000 genomes] |
rs12079134 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs12131079 | 0.83[AMR][1000 genomes] |
rs12143948 | 1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.91[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap] |
rs12239100 | 0.96[ASN][1000 genomes] |
rs12239114 | 1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap] |
rs12724079 | 0.85[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.84[MKK][hapmap];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs12746592 | 1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes] |
rs1360554 | 1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.91[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs1556488 | 0.95[CHB][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes] |
rs1886905 | 1.00[ASW][hapmap];0.84[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];0.91[JPT][hapmap];0.94[LWK][hapmap];0.82[MEX][hapmap];0.88[MKK][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes] |
rs2297480 | 0.89[CHB][hapmap] |
rs35615695 | 0.85[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes] |
rs3892792 | 1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap] |
rs5005770 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap] |
rs56675301 | 0.81[ASN][1000 genomes] |
rs6684889 | 0.84[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.91[YRI][hapmap];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6688636 | 0.92[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs6696888 | 0.85[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.87[ASN][1000 genomes] |
rs7411786 | 0.85[ASN][1000 genomes] |
rs7556102 | 0.82[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
ASH1L | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014