SNP Report
Basic Infomation
| Name | rs1556488 dbSNP |
|---|---|
| Location | chr:1,155540660 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 73)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10752611 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10796943 | 0.96[CEU][hapmap];0.94[CHB][hapmap];0.97[GIH][hapmap];0.81[MEX][hapmap];0.97[TSI][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs10796945 | 0.92[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];0.90[JPT][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10796946 | 0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10796947 | 0.95[ASN][1000 genomes] |
| rs10908465 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.88[ASN][1000 genomes] |
| rs10908466 | 0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10908467 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10908469 | 0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap];0.82[EUR][1000 genomes] |
| rs10908470 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10908471 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10908479 | 0.96[CEU][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes] |
| rs10908481 | 0.84[CEU][hapmap];0.81[JPT][hapmap];0.85[TSI][hapmap] |
| rs11264369 | 0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap] |
| rs11264371 | 0.84[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.94[GIH][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.84[MKK][hapmap];0.88[ASN][1000 genomes] |
| rs11264372 | 0.84[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.94[GIH][hapmap];0.90[JPT][hapmap];0.86[MEX][hapmap];0.88[ASN][1000 genomes] |
| rs11264374 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11264375 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11264380 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11264381 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11264386 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11264387 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.97[GIH][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11264393 | 0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11582072 | 0.95[ASN][1000 genomes] |
| rs12026638 | 0.92[CEU][hapmap];0.89[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12028416 | 0.83[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12030596 | 0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12035524 | 0.80[CEU][hapmap];0.85[GIH][hapmap];0.81[JPT][hapmap];0.81[MEX][hapmap] |
| rs12037824 | 0.86[ASN][1000 genomes] |
| rs12041534 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12047756 | 0.81[JPT][hapmap];0.89[EUR][1000 genomes] |
| rs12048286 | 0.84[AMR][1000 genomes] |
| rs12067371 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs12079134 | 0.96[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.87[YRI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12093350 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs12143948 | 0.95[CHB][hapmap];0.97[CHD][hapmap];0.90[JPT][hapmap] |
| rs12239100 | 0.81[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12724079 | 0.95[CHB][hapmap];0.88[CHD][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs12740629 | 0.86[EUR][1000 genomes] |
| rs12744132 | 0.81[CEU][hapmap];0.81[JPT][hapmap] |
| rs12746592 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12758945 | 0.84[EUR][1000 genomes] |
| rs1325908 | 0.95[CHB][hapmap];0.91[CHD][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs1360554 | 0.95[CHB][hapmap];0.97[CHD][hapmap];0.90[JPT][hapmap];0.82[TSI][hapmap];0.94[ASN][1000 genomes] |
| rs1886905 | 0.96[CEU][hapmap];0.88[CHD][hapmap];0.81[JPT][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap] |
| rs2048431 | 0.96[CEU][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.89[EUR][1000 genomes] |
| rs2175391 | 0.96[CEU][hapmap];0.81[CHB][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];0.89[EUR][1000 genomes] |
| rs34124416 | 0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs34620961 | 0.86[EUR][1000 genomes] |
| rs348186 | 0.85[EUR][1000 genomes] |
| rs348196 | 0.80[CEU][hapmap];0.85[GIH][hapmap];0.81[JPT][hapmap] |
| rs35615695 | 0.95[CHB][hapmap];0.94[CHD][hapmap];0.90[JPT][hapmap];0.82[TSI][hapmap];0.97[ASN][1000 genomes] |
| rs3738590 | 0.96[CEU][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes] |
| rs3851912 | 0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs3892792 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes] |
| rs475550 | 0.96[CEU][hapmap];0.88[GIH][hapmap];0.81[JPT][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];0.87[EUR][1000 genomes] |
| rs5005770 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap] |
| rs5020058 | 0.87[EUR][1000 genomes] |
| rs6427278 | 0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6427286 | 0.81[JPT][hapmap] |
| rs644853 | 0.90[JPT][hapmap] |
| rs6672128 | 0.87[EUR][1000 genomes] |
| rs6684889 | 0.84[CHB][hapmap];0.89[ASN][1000 genomes] |
| rs6688636 | 0.95[CHB][hapmap];0.97[CHD][hapmap];0.90[JPT][hapmap];0.82[TSI][hapmap];0.95[ASN][1000 genomes] |
| rs6696888 | 0.95[CHB][hapmap];0.94[CHD][hapmap];0.90[JPT][hapmap];0.82[TSI][hapmap];0.99[ASN][1000 genomes] |
| rs670876 | 0.81[CEU][hapmap] |
| rs678157 | 0.81[CEU][hapmap];0.81[JPT][hapmap] |
| rs71628674 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7411786 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7521594 | 0.87[EUR][1000 genomes] |
| rs7541060 | 0.81[JPT][hapmap] |
| rs7556102 | 0.90[JPT][hapmap] |
| rs821551 | 0.83[CHD][hapmap];0.90[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ASH1L-AS1 | Distal transcriptional regulation |
| ASH1L | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014