SNP Report
Name | rs2175391   dbSNP |
---|---|
Location | chr:1,155625602 |
Allele | G/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10752611 | 0.96[CEU][hapmap];0.81[CHB][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.94[TSI][hapmap];0.84[EUR][1000 genomes] |
rs10796945 | 0.88[CEU][hapmap];0.81[CHB][hapmap];0.85[GIH][hapmap];0.91[JPT][hapmap];0.94[TSI][hapmap] |
rs10908469 | 0.92[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap] |
rs10908470 | 0.96[CEU][hapmap];0.81[CHB][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes] |
rs10908471 | 0.96[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.89[EUR][1000 genomes] |
rs10908479 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs10908481 | 0.88[CEU][hapmap];0.85[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap] |
rs11264380 | 0.96[CEU][hapmap];0.81[CHB][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.84[EUR][1000 genomes] |
rs11264381 | 0.96[CEU][hapmap];0.85[CHB][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.84[EUR][1000 genomes] |
rs11264386 | 0.92[EUR][1000 genomes] |
rs11264387 | 0.96[CEU][hapmap];0.81[CHB][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.94[TSI][hapmap];0.93[EUR][1000 genomes] |
rs11264393 | 0.95[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs12030596 | 0.88[EUR][1000 genomes] |
rs12035524 | 0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs12047756 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12079134 | 0.92[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap] |
rs12093350 | 0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs12143948 | 0.81[CHB][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap] |
rs12724079 | 0.81[CHB][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap] |
rs12740629 | 0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs12744132 | 0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs12746592 | 0.96[CEU][hapmap];0.81[CHB][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.82[EUR][1000 genomes] |
rs12758945 | 0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs1360554 | 0.81[CHB][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap] |
rs1556488 | 0.96[CEU][hapmap];0.81[CHB][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];0.89[EUR][1000 genomes] |
rs2048431 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2666826 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes] |
rs28662267 | 0.81[EUR][1000 genomes] |
rs34124416 | 0.97[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs34620961 | 0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs348186 | 0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs348192 | 0.82[AMR][1000 genomes] |
rs348196 | 1.00[ASW][hapmap];0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.86[MEX][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs35615695 | 0.81[CHB][hapmap];0.91[JPT][hapmap] |
rs3738590 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs3851912 | 0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs3892792 | 0.96[CEU][hapmap];0.81[CHB][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.91[EUR][1000 genomes] |
rs475550 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs6427278 | 0.91[EUR][1000 genomes] |
rs6427286 | 0.90[CHB][hapmap];1.00[JPT][hapmap] |
rs644853 | 0.91[JPT][hapmap] |
rs6672128 | 0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs6688636 | 0.81[CHB][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap] |
rs6696888 | 0.81[CHB][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap] |
rs670876 | 0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[ASN][1000 genomes] |
rs678157 | 0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs708611 | 0.85[CHB][hapmap];0.97[CHD][hapmap] |
rs71628674 | 0.97[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs7411786 | 0.84[EUR][1000 genomes] |
rs7521594 | 0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs7541060 | 0.85[CHB][hapmap];1.00[JPT][hapmap] |
rs821551 | 0.91[JPT][hapmap] |
rs822490 | 0.95[CHD][hapmap];0.82[JPT][hapmap] |
rs860295 | 0.85[CHB][hapmap];0.97[CHD][hapmap];0.82[JPT][hapmap] |
Symbol | Regulation type |
---|---|
YY1AP1 | Distal transcriptional regulation |
ENSG00000246203 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014