SNP Report

Basic Infomation

Name	rs2175391 dbSNP
Location	chr:1,155625602
Allele	G/T

LD-proxy of rSNPs(r²>0.8) (count: 54)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10752611	0.96[CEU][hapmap];0.81[CHB][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.94[TSI][hapmap];0.84[EUR][1000 genomes]
rs10796945	0.88[CEU][hapmap];0.81[CHB][hapmap];0.85[GIH][hapmap];0.91[JPT][hapmap];0.94[TSI][hapmap]
rs10908469	0.92[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap]
rs10908470	0.96[CEU][hapmap];0.81[CHB][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes]
rs10908471	0.96[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.89[EUR][1000 genomes]
rs10908479	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10908481	0.88[CEU][hapmap];0.85[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap]
rs11264380	0.96[CEU][hapmap];0.81[CHB][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.84[EUR][1000 genomes]
rs11264381	0.96[CEU][hapmap];0.85[CHB][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.84[EUR][1000 genomes]
rs11264386	0.92[EUR][1000 genomes]
rs11264387	0.96[CEU][hapmap];0.81[CHB][hapmap];0.94[GIH][hapmap];0.82[JPT][hapmap];0.94[TSI][hapmap];0.93[EUR][1000 genomes]
rs11264393	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12030596	0.88[EUR][1000 genomes]
rs12035524	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12047756	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12079134	0.92[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap]
rs12093350	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12143948	0.81[CHB][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap]
rs12724079	0.81[CHB][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap]
rs12740629	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12744132	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12746592	0.96[CEU][hapmap];0.81[CHB][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.82[EUR][1000 genomes]
rs12758945	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1360554	0.81[CHB][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap]
rs1556488	0.96[CEU][hapmap];0.81[CHB][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];0.89[EUR][1000 genomes]
rs2048431	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2666826	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs28662267	0.81[EUR][1000 genomes]
rs34124416	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34620961	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs348186	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs348192	0.82[AMR][1000 genomes]
rs348196	1.00[ASW][hapmap];0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.86[MEX][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35615695	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs3738590	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3851912	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3892792	0.96[CEU][hapmap];0.81[CHB][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.91[EUR][1000 genomes]
rs475550	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6427278	0.91[EUR][1000 genomes]
rs6427286	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs644853	0.91[JPT][hapmap]
rs6672128	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6688636	0.81[CHB][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap]
rs6696888	0.81[CHB][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap]
rs670876	0.84[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs678157	0.84[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs708611	0.85[CHB][hapmap];0.97[CHD][hapmap]
rs71628674	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7411786	0.84[EUR][1000 genomes]
rs7521594	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7541060	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs821551	0.91[JPT][hapmap]
rs822490	0.95[CHD][hapmap];0.82[JPT][hapmap]
rs860295	0.85[CHB][hapmap];0.97[CHD][hapmap];0.82[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
YY1AP1	Distal transcriptional regulation
ENSG00000246203	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 9)

eQTL related gene	Source
SLC12A4	SCAN
ADAM15	Pritchard
SPRR2A	SCAN
YY1AP1	SCAN
RIT1	SCAN
FDPS	SCAN
THEM5	SCAN
YY1AP1	SCAN
GPATCH4	SCAN