SNP Report

Basic Infomation

Name	rs860295 dbSNP
Location	chr:1,155767708
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 45)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10796954	0.80[ASN][1000 genomes]
rs10908479	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs10908481	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[JPT][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap];0.83[ASN][1000 genomes]
rs10908482	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11264410	0.93[ASN][1000 genomes]
rs12024187	0.81[ASN][1000 genomes]
rs12035524	0.85[CHB][hapmap];0.97[CHD][hapmap];0.82[JPT][hapmap]
rs12047756	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs12563627	0.80[JPT][hapmap];0.83[MEX][hapmap]
rs12744132	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs1749405	0.80[JPT][hapmap];0.82[MEX][hapmap]
rs2048431	0.85[CHB][hapmap];0.97[CHD][hapmap];0.82[JPT][hapmap]
rs2175391	0.85[CHB][hapmap];0.97[CHD][hapmap];0.82[JPT][hapmap]
rs2948071	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2948072	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2985707	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2993207	0.80[JPT][hapmap];0.83[MEX][hapmap]
rs348196	0.85[CHB][hapmap];0.97[CHD][hapmap];0.82[JPT][hapmap]
rs3738590	0.84[CHB][hapmap];0.97[CHD][hapmap];0.82[JPT][hapmap]
rs3820594	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs4278368	0.83[ASN][1000 genomes]
rs4661151	0.83[MEX][hapmap]
rs4661175	0.87[MEX][hapmap]
rs475550	0.97[CHD][hapmap];0.82[JPT][hapmap]
rs488079	0.80[JPT][hapmap];0.82[MEX][hapmap]
rs490608	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs625658	0.80[JPT][hapmap];0.83[MEX][hapmap]
rs6427286	0.95[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6427287	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs644853	0.93[YRI][hapmap]
rs6662953	0.95[ASN][1000 genomes]
rs6665227	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs670876	0.85[CHB][hapmap]
rs678157	0.82[JPT][hapmap]
rs708611	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs729022	0.85[CEU][hapmap];0.80[JPT][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap]
rs7541060	0.96[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7550402	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs821551	0.92[CEU][hapmap];0.90[CHB][hapmap];0.82[CHD][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap]
rs822025	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs822478	0.90[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]
rs822490	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs822505	0.84[CEU][hapmap];0.80[JPT][hapmap]
rs822508	0.85[CEU][hapmap];0.80[JPT][hapmap];0.96[MEX][hapmap];0.85[MKK][hapmap];0.92[TSI][hapmap]
rs9426933	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
DAP3	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 5)

eQTL related gene	Source
PRUNE	SCAN
BCAN	SCAN
YY1AP1	SCAN
RIT1	SCAN
SPRR3	SCAN