SNP Report
Basic Infomation
| Name | rs822478 dbSNP |
|---|---|
| Location | chr:1,155793969 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10796954 | 0.91[ASN][1000 genomes] |
| rs10796955 | 0.89[JPT][hapmap] |
| rs10908481 | 0.90[CHB][hapmap];0.82[CHD][hapmap] |
| rs11264422 | 0.89[JPT][hapmap] |
| rs12744132 | 0.80[CHB][hapmap] |
| rs1889532 | 0.89[JPT][hapmap] |
| rs3820594 | 0.84[CHB][hapmap];0.90[JPT][hapmap] |
| rs4661175 | 0.89[JPT][hapmap] |
| rs4661218 | 0.89[JPT][hapmap] |
| rs490498 | 1.00[ASW][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap] |
| rs6427286 | 0.85[CHB][hapmap] |
| rs644853 | 0.84[CHB][hapmap];0.81[JPT][hapmap] |
| rs670523 | 1.00[ASW][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap] |
| rs708611 | 0.90[CHB][hapmap];0.84[CHD][hapmap] |
| rs7541060 | 0.90[CHB][hapmap] |
| rs821551 | 1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap] |
| rs822490 | 0.84[CHB][hapmap];0.90[JPT][hapmap] |
| rs860295 | 0.90[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap] |
| rs928596 | 0.89[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| GON4L | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014