SNP Report

Basic Infomation

Name	rs4661218 dbSNP
Location	chr:1,155960185
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 37)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10796955	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1111102	0.86[CEU][hapmap];0.82[TSI][hapmap]
rs11264422	0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11264426	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.86[YRI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11585845	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12037177	0.95[CEU][hapmap];0.86[MEX][hapmap];0.85[TSI][hapmap]
rs12118795	0.90[CEU][hapmap];0.85[CHD][hapmap];0.85[TSI][hapmap]
rs12568523	0.95[CEU][hapmap]
rs1749405	0.80[CHB][hapmap]
rs1889532	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1889533	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2016251	0.95[CEU][hapmap];0.86[MEX][hapmap];0.88[TSI][hapmap]
rs2282301	0.95[CEU][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap]
rs2297649	0.95[CEU][hapmap];0.89[GIH][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2364403	0.82[MEX][hapmap]
rs2993207	0.80[CHB][hapmap]
rs3856261	0.88[JPT][hapmap]
rs4661175	0.86[ASW][hapmap];0.93[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4661217	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs488079	0.80[CHB][hapmap]
rs490498	0.93[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap]
rs539602	0.80[CHB][hapmap]
rs61813286	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs625658	0.80[CHB][hapmap]
rs6427297	0.81[CEU][hapmap]
rs6667652	0.95[CEU][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap]
rs6670493	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6696019	0.95[CEU][hapmap]
rs670523	0.93[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap]
rs729022	0.82[MEX][hapmap]
rs7534858	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs822478	0.89[JPT][hapmap]
rs867549	0.95[CEU][hapmap];0.91[MEX][hapmap]
rs867550	0.95[CEU][hapmap];0.91[MEX][hapmap]
rs915178	0.86[CEU][hapmap]
rs915181	0.95[CEU][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap]
rs928596	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ARHGEF2	Proximal transcriptional regulation
ENSG00000224276	Proximal transcriptional regulation
KIAA0907	Distal transcriptional regulation
LAMTOR2	Distal transcriptional regulation
ARHGEF2	Distal transcriptional regulation
ENSG00000241471	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 5)

eQTL related gene	Source
PRUNE	SCAN
YY1AP1	SCAN
RIT1	SCAN
SPRR3	SCAN
ROBLD3	SCAN