SNP Report
Basic Infomation
| Name | rs2364403 dbSNP |
|---|---|
| Location | chr:1,155927752 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10796955 | 0.85[GIH][hapmap];0.81[MEX][hapmap];0.82[TSI][hapmap] |
| rs10908483 | 0.88[AFR][1000 genomes] |
| rs11264426 | 0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.94[ASN][1000 genomes] |
| rs11585845 | 0.95[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap];0.94[ASN][1000 genomes] |
| rs12037177 | 0.92[ASW][hapmap];0.90[CHB][hapmap];0.82[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.97[LWK][hapmap];0.85[MEX][hapmap];0.85[MKK][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.80[AMR][1000 genomes] |
| rs12080846 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12091273 | 0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12091361 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12144175 | 0.90[AFR][1000 genomes] |
| rs12568523 | 0.89[CHB][hapmap];0.86[JPT][hapmap];0.91[YRI][hapmap] |
| rs1889532 | 0.81[MEX][hapmap] |
| rs2016251 | 0.85[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.86[MEX][hapmap];0.82[TSI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2282301 | 0.80[ASW][hapmap];0.85[CHB][hapmap];0.82[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.82[LWK][hapmap];0.91[MEX][hapmap];0.94[MKK][hapmap];0.91[YRI][hapmap];0.80[AMR][1000 genomes] |
| rs2297649 | 0.89[CHB][hapmap];0.97[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.84[TSI][hapmap];0.96[ASN][1000 genomes] |
| rs4661218 | 0.82[MEX][hapmap] |
| rs66466805 | 0.94[AFR][1000 genomes];0.80[AMR][1000 genomes] |
| rs6667652 | 0.93[ASW][hapmap];0.90[CHB][hapmap];0.82[CHD][hapmap];0.97[GIH][hapmap];0.80[JPT][hapmap];0.97[LWK][hapmap];0.91[MEX][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs6696019 | 0.85[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes] |
| rs7534858 | 0.90[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap];0.90[ASN][1000 genomes] |
| rs7545308 | 0.81[AFR][1000 genomes] |
| rs867548 | 0.92[AFR][1000 genomes];0.80[AMR][1000 genomes] |
| rs867549 | 0.80[ASW][hapmap];0.90[CHB][hapmap];0.82[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.82[LWK][hapmap];0.91[MEX][hapmap];0.94[MKK][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.80[AMR][1000 genomes] |
| rs867550 | 0.93[ASW][hapmap];0.90[CHB][hapmap];0.82[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.97[LWK][hapmap];0.91[MEX][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.80[AMR][1000 genomes] |
| rs915181 | 0.93[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.91[MEX][hapmap];0.86[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs928596 | 0.82[MEX][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ARHGEF2 | Distal transcriptional regulation |
| RXFP4 | Distal transcriptional regulation |
| ARHGEF2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 8)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014