SNP Report
Name | rs12568523   dbSNP |
---|---|
Location | chr:1,155897666 |
Allele | A/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10796955 | 0.95[CEU][hapmap] |
rs1111102 | 0.80[CEU][hapmap] |
rs11264426 | 0.95[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap] |
rs11585845 | 0.95[CEU][hapmap];0.83[CHB][hapmap];0.86[JPT][hapmap] |
rs12026057 | 0.86[EUR][1000 genomes] |
rs12037177 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.85[EUR][1000 genomes] |
rs12118795 | 0.85[CEU][hapmap] |
rs12144175 | 0.83[EUR][1000 genomes] |
rs1889532 | 0.95[CEU][hapmap] |
rs2016251 | 1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.82[EUR][1000 genomes] |
rs2282301 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.83[EUR][1000 genomes] |
rs2297649 | 1.00[CEU][hapmap];0.86[JPT][hapmap] |
rs2364403 | 0.89[CHB][hapmap];0.86[JPT][hapmap];0.91[YRI][hapmap] |
rs4661218 | 0.95[CEU][hapmap] |
rs66466805 | 0.86[EUR][1000 genomes] |
rs6667652 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap];0.80[EUR][1000 genomes] |
rs6670493 | 0.95[CEU][hapmap] |
rs6696019 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap] |
rs7534858 | 0.95[CEU][hapmap];0.86[JPT][hapmap] |
rs7545308 | 0.86[AFR][1000 genomes];0.80[EUR][1000 genomes] |
rs867548 | 0.86[EUR][1000 genomes] |
rs867549 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.86[EUR][1000 genomes] |
rs867550 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.86[EUR][1000 genomes] |
rs915178 | 0.80[CEU][hapmap] |
rs915181 | 1.00[CEU][hapmap];0.89[CHB][hapmap];0.86[JPT][hapmap];0.91[YRI][hapmap];0.82[EUR][1000 genomes] |
rs928596 | 0.95[CEU][hapmap] |
Symbol | Regulation type |
---|---|
KIAA0907 | Proximal transcriptional regulation |
SCARNA4 | Proximal transcriptional regulation |
ARHGEF2 | Distal transcriptional regulation |
KIAA0907 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014