SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 22)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10796955	0.81[ASW][hapmap];0.90[CEU][hapmap];0.89[CHD][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs1111102	0.95[CEU][hapmap];0.90[TSI][hapmap]
rs11264426	0.90[CEU][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes]
rs11585845	0.90[CEU][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs12037177	0.86[CEU][hapmap];0.81[TSI][hapmap]
rs12568523	0.85[CEU][hapmap]
rs1889532	0.90[CEU][hapmap];0.85[CHD][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes]
rs1889533	0.81[EUR][1000 genomes]
rs2016251	0.86[CEU][hapmap];0.84[TSI][hapmap]
rs2282301	0.86[CEU][hapmap];0.81[TSI][hapmap]
rs2297649	0.86[CEU][hapmap];0.87[TSI][hapmap]
rs4661218	0.90[CEU][hapmap];0.85[CHD][hapmap];0.85[TSI][hapmap]
rs6427297	0.90[CEU][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap]
rs6667652	0.86[CEU][hapmap];0.81[TSI][hapmap]
rs6670493	0.90[CEU][hapmap]
rs6696019	0.86[CEU][hapmap]
rs7534858	0.90[CEU][hapmap];0.91[TSI][hapmap];0.80[EUR][1000 genomes]
rs867549	0.86[CEU][hapmap]
rs867550	0.86[CEU][hapmap]
rs915178	0.95[CEU][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap]
rs915181	0.86[CEU][hapmap];0.84[TSI][hapmap]
rs928596	0.90[CEU][hapmap];0.85[CHD][hapmap];0.85[TSI][hapmap]

rSNP related genes

Symbol	Regulation type
ARHGEF2	Proximal transcriptional regulation
KIAA0907	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 6)