SNP Report
Name | rs12118795   dbSNP |
---|---|
Location | chr:1,155963035 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10796955 | 0.81[ASW][hapmap];0.90[CEU][hapmap];0.89[CHD][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes] |
rs1111102 | 0.95[CEU][hapmap];0.90[TSI][hapmap] |
rs11264426 | 0.90[CEU][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes] |
rs11585845 | 0.90[CEU][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes] |
rs12037177 | 0.86[CEU][hapmap];0.81[TSI][hapmap] |
rs12568523 | 0.85[CEU][hapmap] |
rs1889532 | 0.90[CEU][hapmap];0.85[CHD][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes] |
rs1889533 | 0.81[EUR][1000 genomes] |
rs2016251 | 0.86[CEU][hapmap];0.84[TSI][hapmap] |
rs2282301 | 0.86[CEU][hapmap];0.81[TSI][hapmap] |
rs2297649 | 0.86[CEU][hapmap];0.87[TSI][hapmap] |
rs4661218 | 0.90[CEU][hapmap];0.85[CHD][hapmap];0.85[TSI][hapmap] |
rs6427297 | 0.90[CEU][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap] |
rs6667652 | 0.86[CEU][hapmap];0.81[TSI][hapmap] |
rs6670493 | 0.90[CEU][hapmap] |
rs6696019 | 0.86[CEU][hapmap] |
rs7534858 | 0.90[CEU][hapmap];0.91[TSI][hapmap];0.80[EUR][1000 genomes] |
rs867549 | 0.86[CEU][hapmap] |
rs867550 | 0.86[CEU][hapmap] |
rs915178 | 0.95[CEU][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap] |
rs915181 | 0.86[CEU][hapmap];0.84[TSI][hapmap] |
rs928596 | 0.90[CEU][hapmap];0.85[CHD][hapmap];0.85[TSI][hapmap] |
Symbol | Regulation type |
---|---|
ARHGEF2 | Proximal transcriptional regulation |
KIAA0907 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014