SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 20)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10796955	0.81[CEU][hapmap];0.84[TSI][hapmap]
rs1111102	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11264426	0.81[CEU][hapmap]
rs11486142	0.86[AMR][1000 genomes]
rs11585845	0.81[CEU][hapmap];0.84[TSI][hapmap]
rs12037177	0.81[TSI][hapmap]
rs12118795	0.90[CEU][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap]
rs1889532	0.81[CEU][hapmap]
rs2282301	0.81[TSI][hapmap]
rs2297649	0.81[TSI][hapmap]
rs3820592	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4661218	0.81[CEU][hapmap]
rs59781317	0.88[AMR][1000 genomes]
rs6667652	0.81[TSI][hapmap]
rs6670493	0.80[CEU][hapmap]
rs72708238	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72708239	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7534858	0.81[CEU][hapmap];0.84[TSI][hapmap]
rs915178	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs928596	0.81[CEU][hapmap]

rSNP related genes

Symbol	Regulation type
ENSG00000227010	Proximal transcriptional regulation
ARHGEF2	Distal transcriptional regulation
SSR2	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 6)