SNP Report
Name | rs6427297   dbSNP |
---|---|
Location | chr:1,155975493 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10796955 | 0.81[CEU][hapmap];0.84[TSI][hapmap] |
rs1111102 | 0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs11264426 | 0.81[CEU][hapmap] |
rs11486142 | 0.86[AMR][1000 genomes] |
rs11585845 | 0.81[CEU][hapmap];0.84[TSI][hapmap] |
rs12037177 | 0.81[TSI][hapmap] |
rs12118795 | 0.90[CEU][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap] |
rs1889532 | 0.81[CEU][hapmap] |
rs2282301 | 0.81[TSI][hapmap] |
rs2297649 | 0.81[TSI][hapmap] |
rs3820592 | 0.95[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs4661218 | 0.81[CEU][hapmap] |
rs59781317 | 0.88[AMR][1000 genomes] |
rs6667652 | 0.81[TSI][hapmap] |
rs6670493 | 0.80[CEU][hapmap] |
rs72708238 | 0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs72708239 | 0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7534858 | 0.81[CEU][hapmap];0.84[TSI][hapmap] |
rs915178 | 1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs928596 | 0.81[CEU][hapmap] |
Symbol | Regulation type |
---|---|
ENSG00000227010 | Proximal transcriptional regulation |
ARHGEF2 | Distal transcriptional regulation |
SSR2 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014