SNP Report
Basic Infomation
| Name | rs6667652 dbSNP |
|---|---|
| Location | chr:1,155906798 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 38)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10796955 | 0.95[CEU][hapmap];0.88[GIH][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes] |
| rs10908481 | 0.82[MEX][hapmap] |
| rs10908483 | 0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs1111102 | 0.81[CEU][hapmap] |
| rs11264426 | 0.95[CEU][hapmap];0.84[CHB][hapmap];0.80[JPT][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap] |
| rs11585845 | 0.95[CEU][hapmap];0.84[CHB][hapmap];0.80[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap] |
| rs12026057 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12037177 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12080846 | 0.89[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs12091273 | 0.86[AFR][1000 genomes] |
| rs12091361 | 0.88[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs12118795 | 0.86[CEU][hapmap];0.81[TSI][hapmap] |
| rs12144175 | 0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs12568523 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[YRI][hapmap];0.80[EUR][1000 genomes] |
| rs1889532 | 0.95[CEU][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes] |
| rs1889533 | 0.83[AMR][1000 genomes] |
| rs2016251 | 0.93[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.80[JPT][hapmap];0.83[LWK][hapmap];0.95[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs2282301 | 0.86[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs2297649 | 1.00[CEU][hapmap];0.88[GIH][hapmap];0.80[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes] |
| rs2364403 | 0.93[ASW][hapmap];0.90[CHB][hapmap];0.82[CHD][hapmap];0.97[GIH][hapmap];0.80[JPT][hapmap];0.97[LWK][hapmap];0.91[MEX][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs3820594 | 0.86[MEX][hapmap] |
| rs4661218 | 0.95[CEU][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap] |
| rs6427297 | 0.81[TSI][hapmap] |
| rs66466805 | 0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs66669006 | 0.87[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs6670477 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs6670493 | 0.95[CEU][hapmap] |
| rs6696019 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs72708205 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs729022 | 0.83[MEX][hapmap] |
| rs7534858 | 0.95[CEU][hapmap];0.80[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap] |
| rs7545308 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs867548 | 0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs867549 | 0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.94[TSI][hapmap];0.91[YRI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs867550 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs915178 | 0.81[CEU][hapmap];0.81[TSI][hapmap] |
| rs915181 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[CHD][hapmap];0.97[GIH][hapmap];0.80[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs928596 | 0.95[CEU][hapmap];0.91[MEX][hapmap];0.85[TSI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KIAA0907 | Proximal transcriptional regulation |
| RXFP4 | Proximal transcriptional regulation |
| UBQLN4 | Distal transcriptional regulation |
| LAMTOR2 | Distal transcriptional regulation |
| ARHGEF2 | Distal transcriptional regulation |
| KIAA0907 | Distal transcriptional regulation |
| RXFP4 | Distal transcriptional regulation |
| RAB25 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014