SNP Report
Basic Infomation
| Name | rs12080846 dbSNP |
|---|---|
| Location | chr:1,155929701 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10908483 | 0.89[AFR][1000 genomes] |
| rs11264426 | 0.93[ASN][1000 genomes] |
| rs11585845 | 0.93[ASN][1000 genomes] |
| rs12037177 | 0.90[AFR][1000 genomes];0.80[AMR][1000 genomes] |
| rs12091273 | 0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12091361 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12144175 | 0.91[AFR][1000 genomes] |
| rs2016251 | 0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2282301 | 0.80[AMR][1000 genomes] |
| rs2297649 | 0.95[ASN][1000 genomes] |
| rs2364403 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs66466805 | 0.95[AFR][1000 genomes];0.80[AMR][1000 genomes] |
| rs6667652 | 0.89[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs6670477 | 0.80[AFR][1000 genomes] |
| rs6696019 | 0.84[AFR][1000 genomes] |
| rs7534858 | 0.89[ASN][1000 genomes] |
| rs7545308 | 0.81[AFR][1000 genomes] |
| rs867548 | 0.93[AFR][1000 genomes];0.80[AMR][1000 genomes] |
| rs867549 | 0.81[AFR][1000 genomes];0.80[AMR][1000 genomes] |
| rs867550 | 0.93[AFR][1000 genomes];0.80[AMR][1000 genomes] |
| rs915181 | 0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RXFP4 | Distal transcriptional regulation |
| RAB25 | Distal transcriptional regulation |
| KIAA0907 | Distal transcriptional regulation |
| ARHGEF2 | Distal transcriptional regulation |
| ARHGEF2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014